Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d08f
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32400.2 68414.m03998 senescence-associated family protein co... 34 0.064
At1g32400.1 68414.m03997 senescence-associated family protein co... 34 0.064
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le... 30 1.0
At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 29 2.4
At3g04290.1 68416.m00454 GDSL-motif lipase/hydrolase family prot... 28 4.2
At1g28695.1 68414.m03534 expressed protein ; expression supporte... 28 5.5
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 27 7.3
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr... 27 7.3
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 27 9.6
At1g78420.1 68414.m09138 expressed protein 27 9.6
At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family... 27 9.6
>At1g32400.2 68414.m03998 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 34.3 bits (75), Expect = 0.064
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 261 VGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVF 398
+G FVI+ GC G S C L Y++ +++L+ ++L +F
Sbjct: 88 IGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIF 133
>At1g32400.1 68414.m03997 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 34.3 bits (75), Expect = 0.064
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 261 VGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVF 398
+G FVI+ GC G S C L Y++ +++L+ ++L +F
Sbjct: 88 IGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIF 133
>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
leucine zipper-containing protein - Lycopersicon
esculentum, EMBL:Z12127 contains Pfam domain PF03081:
Exo70 exocyst complex subunit;
Length = 653
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 395 HHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNE 276
HH+A + H H+ ED +H+ L T S+ ++E
Sbjct: 7 HHHANESSENHDHKSEDHENKQHSDELHSSTPESQSESSE 46
>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -1
Query: 431 RDSSNYSV--EIHKHHYAQGQFQCHQHQHEDR 342
RD++N + E H HH+ Q Q Q HQHQH+ +
Sbjct: 277 RDTNNTATAEEGHYHHHQQQQQQ-HQHQHQQQ 307
>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -1
Query: 431 RDSSNYSV--EIHKHHYAQGQFQCHQHQHEDR 342
RD++N + E H HH+ Q Q Q HQHQH+ +
Sbjct: 277 RDTNNTATAEEGHYHHHQQQQQQ-HQHQHQQQ 307
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 461 VLLEGL-VHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDR 342
+L +GL ++P N+ + H HH Q Q H H H+ +
Sbjct: 129 LLRQGLPLYPPDIIPNHQLHPHPHHQQQQQHNHHHHHHQQQ 169
>At3g04290.1 68416.m00454 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386, EXL1
GI:15054382, EXL2 GI:15054384 from [Arabidopsis
thaliana]; contains Pfam profile: lipase/acylhydrolase
with GDSL-like motif
Length = 366
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 375 LTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPIT 551
L V + D VAA MN + + + F + + +CCG GP + + L P++
Sbjct: 256 LIASVNAEIGQDVFVAANAYQMNMDYLSNPEQFGFVTSKVACCG-QGPYNGIGLCTPVS 313
>At1g28695.1 68414.m03534 expressed protein ; expression supported
by MPSS
Length = 329
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 491 IQLLWSNGSGLVPILDPAHNVLLDDPLYGNQRVRRLH 601
++ W G G +P+LD V +D Y R +RLH
Sbjct: 84 LESFWE-GEGTLPLLDHLMVVAVDQTAYDRCRFKRLH 119
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 401 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNECDASNNHTGHR 243
HK + C+ HQ +G + V G +EE+ N S+ H+G R
Sbjct: 114 HKDQDSMKVDSCNDHQARSTLG-QGKVKEKSGAKNNEEKKNTLTGSSKHSGPR 165
>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 258
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = -1
Query: 365 HQHQHEDRV--GDKHAVALPD 309
HQHQH + V D HA LPD
Sbjct: 45 HQHQHHNNVLSSDHHAFLLPD 65
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 425 SSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASE-ERN 282
SSN+ V +H H + G H H+D + + +GTA E ERN
Sbjct: 498 SSNHKVALHPHERSNGSSNGGDH-HKDNLHPCGSNGSQNGTAHPETERN 545
>At1g78420.1 68414.m09138 expressed protein
Length = 401
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = -1
Query: 380 GQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNECDASNNHTGHRRYPEAG 225
G+ H H H V LP + + E D +NH HR + E G
Sbjct: 289 GESSSHNHNHNVNVSSYSM--LPGNCDSYYDIEQEVDGIDNHHHHRHHYEMG 338
>At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 331
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 426 IPNWMNKTFQQDQDTFHVIEHRFSCCGPTGPGSYLS 533
IP WM+ FQQ + ++ H F G P S L+
Sbjct: 104 IPLWMSNYFQQTPNPPQLVTHFFPPSGLAPPSSNLT 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,910
Number of Sequences: 28952
Number of extensions: 282299
Number of successful extensions: 829
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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