Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d07f
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   2.5  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   5.7  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   5.7  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   9.9  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 251 GAVYLTLTACELAVAARVTTKLRNS 177
           G + +  TACE  +AARV  KL+ S
Sbjct: 328 GVMDVRTTACEALLAARVEQKLKGS 352


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 282 PGSRGVPVRDCPPCRGRGRFNF 347
           PG   +P R C  C+G G+ +F
Sbjct: 185 PGDPRIPGRVCGNCKGSGQLDF 206


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 279 SDGPDASTGGRRVPHVDSLRAGCRSTSHNEAP*QSIIWS 163
           S GP  S    +  +V+S   G  STS+N+ P QS+  S
Sbjct: 324 SSGP--SYHAEQEVNVNSYNGGIPSTSYNDTPQQSVTGS 360


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 303 LGHPYFPGSDGPD 265
           LGHP FPG  G D
Sbjct: 228 LGHPLFPGESGID 240


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -2

Query: 333 PAPDKADSRELGHPYFPGSDGPDASTGG-RRVPHV 232
           P P++ ++    H +FPGS          R  PH+
Sbjct: 73  PTPERPEASAQQHAFFPGSSSQQTDIPNVRPQPHI 107


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 87  DCGQHEQKSELHLVAKK 37
           D   H++KSE+H+V +K
Sbjct: 574 DLNNHQEKSEVHVVIEK 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,716
Number of Sequences: 5004
Number of extensions: 26861
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)