Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d07f
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0133 + 1621574-1625779 28 4.3
01_01_0088 + 688792-691441,691629-693013 28 4.3
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 7.4
09_03_0057 + 11944973-11947159 27 7.4
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 7.4
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 27 7.4
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 27 7.4
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 27 7.4
11_06_0400 - 23134994-23135113,23135140-23135220,23135892-231359... 27 9.8
09_06_0210 - 21597470-21598093 27 9.8
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 ATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 408
A + +VG GG+G T T + R HF+V+IW
Sbjct: 221 AVLPVVGPGGIGKTTFTQHLFHDQRVKKHFHVRIW 255
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 319 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 408
+VG GGVG T N R HF V IW
Sbjct: 257 IVGPGGVGKTTFAQHLYNDHRTKQHFTVMIW 287
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 304 FATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 408
+ T +VG GG G T + N R HF+V++W
Sbjct: 204 YCTSAIVGHGGAGKTTLAQYIYNDERVVNHFDVRMW 239
>09_03_0057 + 11944973-11947159
Length = 728
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 328 GGVGSTFVTLQFRNSARRGYHFNVQIW 408
GGVG T + Q N R +F+V+IW
Sbjct: 264 GGVGKTTLARQVYNDERVKGYFDVRIW 290
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 328 GGVGSTFVTLQFRNSARRGYHFNVQIW 408
GG+G T + N AR HF++Q W
Sbjct: 671 GGMGKTTLARLVYNDARVQNHFDIQAW 697
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -2
Query: 228 SLRAGCRSTSHNEAP*QSIIWSNTAYCQTVCSASRAGVSH---FIS*HGDDCGQHEQKSE 58
S + +TS+NE P +SII Q +C+ A H +S G + G +
Sbjct: 693 SAKNSTENTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVSEIGPEFGPSNDVCK 752
Query: 57 LHLVAKK 37
VAKK
Sbjct: 753 TETVAKK 759
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 319 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 408
+VG GGVG T +T N R HF +++W
Sbjct: 200 IVGMGGVGKTTLTQLVYNDVRVKKHFQLRMW 230
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 298 SQFATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 408
S V LVG GGVG T + N+ R HF++++W
Sbjct: 433 SDLDVVPLVGVGGVGKTTLARFVYNNNRIENHFDLRMW 470
>11_06_0400 -
23134994-23135113,23135140-23135220,23135892-23135959,
23136982-23137078
Length = 121
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 302 WDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTTK 189
W T + + A LPA AV + LT+ + A AA + TK
Sbjct: 85 WQTGNGQRKAAQLCLPANAVRVRLTSLQCA-AAELPTK 121
>09_06_0210 - 21597470-21598093
Length = 207
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 333 PAPDKADSRELGHPYFPGSDGP-DASTGGRRV 241
P PD A + P +PGS P +TGGRRV
Sbjct: 26 PRPDPASPQPDPTPGWPGSLWPASPATGGRRV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,587,006
Number of Sequences: 37544
Number of extensions: 223338
Number of successful extensions: 671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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