Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d05r
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    85   7e-19
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.8  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    24   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   9.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 85.0 bits (201), Expect = 7e-19
 Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 16/250 (6%)
 Frame = -1

Query: 754 GGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLT 575
           GG+       P M+A     +    +CG ++++ R VLTAAHCI+   T       L + 
Sbjct: 163 GGTNTGINEFP-MMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTT-----KLAIV 216

Query: 574 VGTNQWNS-----GGSLHTVSRNITHPHY----VSNTIKNDLGILITSSNIVFNNRVRPI 422
           VG + W+S        LH++++ I HP Y      +   ND+ +L T  +I F ++V P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 421 SLSFDYVP---GGVPVRVAGWGRVRANGALSTNLLEINVRTIDGQTCVRTAAQAAIDLNV 251
            L F +      G  V V GWG    NG LS  L +  +  +    C +      ++   
Sbjct: 277 CLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNIMVN--- 333

Query: 250 RAPPVEPHIELCTFHAEGTGTCNGDSGSAL----ARTDSGLQVGIVSWGFPCARGAPDMF 83
                     +C + A+G   C  DSG  +     RT   + +GI+SWG  C +  P+  
Sbjct: 334 ---------AMCAY-AKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK-YPNGN 382

Query: 82  VRVSAFRSWL 53
            +V ++  W+
Sbjct: 383 TKVGSYIDWI 392


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 580 LTVGTNQWNSGGSLHTVSRNI 518
           L+ GTN W+SG       RN+
Sbjct: 263 LSGGTNHWDSGRRKSAAQRNV 283


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 47  LLQPGPEGADSDEHVRSSPCAREAPRHDADL 139
           +L P  E  D+D+   +  C R AP+   +L
Sbjct: 22  ILSPSSEPLDNDKEQSAQVCYRGAPQDSENL 52


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 47  LLQPGPEGADSDEHVRSSPCAREAPRHDADL 139
           +L P  E  D+D+   +  C R AP+   +L
Sbjct: 22  ILSPSSEPLDNDKEQSAQVCYRGAPQDSENL 52


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 425 RPDAVIENDVRGSYENT 475
           RPD V+ N+  G+YE T
Sbjct: 112 RPDIVLYNNADGNYEVT 128


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 527 QKHHPPSLRVQYHQERLGYSHNFLEHRFQ 441
           Q H   S     +QER GY  +  +H+ Q
Sbjct: 105 QHHQDSSSEHASNQERFGYFSSLKDHQHQ 133


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 172 HCHHCKYQFLLRGMCRARYEVRQEE 246
           HC HC  QF+     R    V   E
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHTGE 63


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +1

Query: 175 CHHCKYQFLLRGMC 216
           CH CKY   +   C
Sbjct: 43  CHKCKYGIAMSSAC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,528
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)