Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d05f
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    55   3e-08
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    50   1e-06
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    36   0.027
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    34   0.083
Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AY313179-1|AAP79304.1|  782|Caenorhabditis elegans myotubularin-...    31   0.78 
AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    28   4.1  
U42832-2|AAA83572.1|  558|Caenorhabditis elegans Udp-glucuronosy...    28   5.5  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   7.2  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
 Frame = +2

Query: 128 RNARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLS 307
           R AR+VGG +   G+ P   A+ N    ++  CG S+L    ++TAAHC    F      
Sbjct: 23  RIARVVGGFETVPGAFPWTAALRNKA-TKAHHCGASILDKTHLITAAHC----FEEDERV 77

Query: 308 GNLRLTVG---TNQWNSGGSLHTVSRNITHPHYVSNTIKNDLGIL-ITSSNIVFNNRVRP 475
            +  + VG    NQ +    +  + R   +P Y  +   +D+ IL I    I FN   +P
Sbjct: 78  SSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQP 136

Query: 476 ISL---SFDYVPGGVPVRVAGWG 535
           I L    F Y PG   V V+GWG
Sbjct: 137 ICLPSKDFVYTPGRQCV-VSGWG 158


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
 Frame = +2

Query: 116 EHVDRNARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTL 295
           ++V  + R++GGS+++  S P  V + + +      CGGS++    VLTAAHC    F  
Sbjct: 50  DYVTLDHRLIGGSESSPHSWPWTVQLLSRLGHHR--CGGSLIDPNFVLTAAHC----FAK 103

Query: 296 GSLSGNLRLTVGTNQWNSGGSLHTVSRNITHPHY-VSNTIKNDLGILITSSNIVFNNRVR 472
                +  + VG ++ +  GS H V+    HP Y +      D  I+     +  +   R
Sbjct: 104 DRRPTSYSVRVGGHR-SGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTAR 162

Query: 473 PISL-SFDYVPGGVPVRVAGWGRVRANGALSTNLL 574
           PI L S   V   + V V GWG      +LS   L
Sbjct: 163 PICLPSLPAVENRLCV-VTGWGSTIEGSSLSAPTL 196


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +2

Query: 221 VCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVG--TNQW---NSGGSLHTVSRN 379
           +CGG+++T + VLTAAHC    F      G      G     W   NS GSL    RN
Sbjct: 61  ICGGTLITLKHVLTAAHCFQKHFGAKKEGGEENSMSGRYCESWVIYNSEGSLEIYFRN 118


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 28/119 (23%), Positives = 52/119 (43%)
 Frame = +2

Query: 137 RIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNL 316
           RI+GG+    G++     ++ G   +  +CG +V+    ++TAAHC + + T        
Sbjct: 37  RIIGGNSIDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRS------ 90

Query: 317 RLTVGTNQWNSGGSLHTVSRNITHPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 493
                    N+     +V     H  Y + T  ND+ +L  SS++     ++P+ L  D
Sbjct: 91  -FVYVREPKNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDL-SKLGIKPVCLVHD 147


>Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical
           protein F53A2.8b protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  WRSLRLPGPSPSLKMTCPSSTSMWTGTLVLWG 149
           W ++ L G  PS+  + PSS+S W+   V  G
Sbjct: 16  WNNMSLSGIYPSISTSTPSSSSSWSSHFVFGG 47


>AY313179-1|AAP79304.1|  782|Caenorhabditis elegans
           myotubularin-related protein MTM-6B protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  WRSLRLPGPSPSLKMTCPSSTSMWTGTLVLWG 149
           W ++ L G  PS+  + PSS+S W+   V  G
Sbjct: 16  WNNMSLSGIYPSISTSTPSSSSSWSSHFVFGG 47


>AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical
           protein W06H8.2 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -2

Query: 226 ADKAPDEDTISHCYHMGVAALSCLATPHNTSVPVHMLVEDGHVIFRLGEGPGSRKERHKK 47
           A+  P ++ I+     G      + T +    PVH+      +IF+ GE P +R+E +KK
Sbjct: 50  ANGVPTQEIINVYDKWGNGQFGVILTGNVQVSPVHLEAPGNAMIFKEGETP-ARREAYKK 108

Query: 46  YS 41
           ++
Sbjct: 109 WA 110


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 98  DMSIFYEHVDRNARIVGGSQAAQGSHPHMVA--MTNGIFIRSFVCGGSVLTARSVLTAAH 271
           +M +++  +  +A++  G  A+Q   P  V   + +     +  C G++++ R +L A H
Sbjct: 149 EMILYWLRIPFSAKVYNGRDASQSEAPWSVFTYLYSKDEQSATTCTGTIVSPRHILIATH 208

Query: 272 C 274
           C
Sbjct: 209 C 209


>U42832-2|AAA83572.1|  558|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein57 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 327 TVRRRFPERLPSVNTATMQ*AAVSTERAVSTEPPQTKLLMKIPL 196
           T+++RF +  P+VNT   Q AA         EPP+   L  IP+
Sbjct: 243 TIKKRF-KNFPNVNTLKQQSAAYFVNTDPLLEPPRALPLNVIPV 285


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 VCGGSVLTARSVLTAAHCI 277
           VCGG ++    V+T+AHC+
Sbjct: 45  VCGGVLIAPSIVITSAHCV 63


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 325 CQTKISRETSKCEYSNNAMSSGEHRACGE 239
           CQT+  +  +K + ++NA+S  ++  CGE
Sbjct: 360 CQTRQEKCATKTQCASNALSFNDYDRCGE 388


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 325 CQTKISRETSKCEYSNNAMSSGEHRACGE 239
           CQT+  +  +K + ++NA+S  ++  CGE
Sbjct: 360 CQTRQEKCATKTQCASNALSFNDYDRCGE 388


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 149 PPQYERSGPHARRRWTCHLQAWGGPRQPQRAPQKVFRILCSFLPSPESD 3
           P  Y  +  H RRR +     +  PRQP+ +     R+   + PS E D
Sbjct: 73  PNPYNTAPTHYRRRSSTEAHRYHPPRQPRSSAPTHHRVPADY-PSDEED 120


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 167 PELPGYPPQYERSGPHARRRWTCHLQAWGGPRQPQRAPQ 51
           P  PGYPPQ+  +   +  ++  H +  GGP  P   PQ
Sbjct: 493 PGHPGYPPQHMNA--FSPGQYPGHQRPPGGPGGPPPGPQ 529


>U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical
           protein C39H7.4 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 197 NGIFIRSFVCGGSVLTARSVLTAAH 271
           N  +I SFV G  +L+++ VLT AH
Sbjct: 241 NVCYIVSFVAGAFILSSQVVLTTAH 265


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 284 VFTLGSLSGNLRLTVGTNQWNSGGSLHTVSRNITHPHYVSNTIKND 421
           VF  GS+S         +++ S GSLHT + NI H H+ + T+ +D
Sbjct: 279 VFYTGSISNVAEFRANPDKYRSTGSLHT-ALNI-HTHH-TGTVGDD 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,094
Number of Sequences: 27780
Number of extensions: 303758
Number of successful extensions: 1063
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)