Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d05f
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    74   1e-15
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
 Frame = +2

Query: 134 ARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGN 313
           +RIVGG+       P M+A     +    +CG ++++ R VLTAAHCI+   T       
Sbjct: 159 SRIVGGTNTGINEFP-MMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTT-----K 212

Query: 314 LRLTVGTNQWNS-----GGSLHTVSRNITHPHY----VSNTIKNDLGILITSSNIVFNNR 466
           L + VG + W+S        LH++++ I HP Y      +   ND+ +L T  +I F ++
Sbjct: 213 LAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDK 272

Query: 467 VRPISLSFDYVP---GGVPVRVAGWGRVRANGALS 562
           V P  L F +      G  V V GWG    NG LS
Sbjct: 273 VGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLS 307


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 320 LTVGTNQWNSGGSLHTVSRNI 382
           L+ GTN W+SG       RN+
Sbjct: 263 LSGGTNHWDSGRRKSAAQRNV 283


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 475 RPDAVIENDVRGSYENT 425
           RPD V+ N+  G+YE T
Sbjct: 112 RPDIVLYNNADGNYEVT 128


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 373 QKHHPPSLRVQYHQERLGYSHNFLEHRFQ 459
           Q H   S     +QER GY  +  +H+ Q
Sbjct: 105 QHHQDSSSEHASNQERFGYFSSLKDHQHQ 133


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 472 PDAVIENDVRGSYENT 425
           PD V+ N+  G+YE T
Sbjct: 105 PDIVLYNNADGNYEVT 120


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 472 PDAVIENDVRGSYENT 425
           PD V+ N+  G+YE T
Sbjct: 118 PDIVLYNNADGNYEVT 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,684
Number of Sequences: 438
Number of extensions: 3808
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)