Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d04r
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             209   1e-54
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.22 
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.6  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           29   2.8  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.8  
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            27   6.4  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)                       27   8.4  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  209 bits (510), Expect = 1e-54
 Identities = 101/145 (69%), Positives = 123/145 (84%)
 Frame = -3

Query: 441 MKFNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 262
           MK N +V+SSRRK+RK HF APS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 261 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 82
           H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT  VGIHPSK  IVKLK++KDRK ILD
Sbjct: 61  HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILD 120

Query: 81  RRAKGRLAALGKDKGKYTEETATAM 7
           R+ + +LA    +KGK+TEE   AM
Sbjct: 121 RKNRSKLA----EKGKHTEEEVQAM 141


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 441 MKFNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 289
           MK + Q+    RK+ K H + P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 114 KMNKDRKAILDRRAKGRLAALGKDKGKYTEETA 16
           ++NK R  I + R +  L+  G DKG+Y +E A
Sbjct: 270 RLNKYRNKIFEARGRVILSQHGTDKGEYVQEVA 302


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 169 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 5
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 78  CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 221
           C  G +  +   ST  +  L+G+ CR M+L HWP  F  +  + + +T  D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 1   GLHGCGSFLGVFTLVFAKCSQS 66
           GLH CG  +     VFAKC Q+
Sbjct: 74  GLHPCGDLVPTMLKVFAKCDQA 95


>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 175 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 297
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 466  CRFGEERQNEVQQAGDFLKKEKQEEAF 386
            C F EER    QQ G   K E+ ++AF
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAF 2609


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -3

Query: 375 SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 214
           + ++++   + + K LR+    K+MP R+D+++Q  V    YK ++VG+  +  R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -3

Query: 435 FNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 283
           F+    S  +K+ +R+F   +HI + + +S  SK+ ++    K    + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  TLVFAKCSQSALCSAIEDCFAVFI 108
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
          Length = 869

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 175 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFANR 300
           L S+N L   N+L TI+L    NLL  +    ++N ++  NR
Sbjct: 503 LLSINRLLSINRLLTINLLLSINLLLSINRLLSINLLLSINR 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,765
Number of Sequences: 59808
Number of extensions: 344507
Number of successful extensions: 1045
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)