Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d04r
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   194   4e-50
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           189   1e-48
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote...    27   5.2  
At2g04920.1 68415.m00513 F-box family protein (FBX9) identical t...    27   9.1  

>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  194 bits (472), Expect = 4e-50
 Identities = 96/141 (68%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -3

Query: 441 MKFNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 262
           MK+N +VTSSRRKNRK HF A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 261 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 82
            YKG++ GKV+QVYR+K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+
Sbjct: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLE 119

Query: 81  RRAKGRLAALGKDKG-KYTEE 22
           R+AKGR AA  K+KG K+T E
Sbjct: 120 RKAKGR-AAADKEKGTKFTSE 139


>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  189 bits (460), Expect = 1e-48
 Identities = 93/141 (65%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -3

Query: 441 MKFNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 262
           MKFN +V+SSRRKNRK HF APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 261 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 82
            +KG++ GKVMQVYR+K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+
Sbjct: 61  TFKGRE-GKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLE 119

Query: 81  RRAKGRLAALGKDKG-KYTEE 22
           R+A GR AA  K+KG K++ E
Sbjct: 120 RKANGR-AAADKEKGTKFSAE 139


>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 798

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 336 KELRQKFNVKSMPIR--KDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREK 175
           KEL +KF    +P +  +DD  ++       Q + K+ + Y KKF    E  + EK
Sbjct: 315 KELEKKFG-GGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAASQETEENEK 369


>At2g04920.1 68415.m00513 F-box family protein (FBX9) identical to
           F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains F-box domain PF:00646; contains
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 376

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = -3

Query: 477 VLSRVVLAKSDRMKFNKQVTSSRRKNRK---RHF-RAPSHIRRVLMSSPLSKELRQKFNV 310
           +LSRV      R++F  +  +S  KNR+   +HF +AP     +L        +    N 
Sbjct: 12  ILSRVPATSLKRLRFTCKQWNSLFKNRRFTEKHFCKAPKQSHVLLWKDYTVCPMSINLNF 71

Query: 309 KSMPIRKDDEVQVVRGHYKGQQV 241
               I     + +   HY  +QV
Sbjct: 72  SGSSIEFKSVLSLKDSHYNSEQV 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,780,963
Number of Sequences: 28952
Number of extensions: 230488
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)