Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d04f
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 202 1e-52
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.8
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 2.4
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 29 3.2
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2) 27 7.3
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1) 27 9.6
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 202 bits (493), Expect = 1e-52
Identities = 95/132 (71%), Positives = 115/132 (87%)
Frame = +3
Query: 51 MKFNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 230
MK N +V+SSRRK+RK HF APS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60
Query: 231 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 410
H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT VGIHPSK IVKLK++KDRK ILD
Sbjct: 61 HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILD 120
Query: 411 RRAKGRLAALGK 446
R+ + +LA GK
Sbjct: 121 RKNRSKLAEKGK 132
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 51 MKFNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 203
MK + Q+ RK+ K H + P HIR+ S + K +R+ N + P IRK
Sbjct: 1 MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 323 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 487
W N IC ++C C+V DE N + ++ G TW R +R + G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 497 LRGLHGCGSFLGVFTLVFAKCSQS 426
L GLH CG + VFAKC Q+
Sbjct: 72 LVGLHPCGDLVPTMLKVFAKCDQA 95
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 414 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 271
C G + + ST + L+G+ CR M+L HWP F + + + +T D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375
>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 317 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 195
L +++ ++YN+L +H+ H N L V T+ N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 26 CRFGEERQNEVQQAGDFLKKEKQEEAF 106
C F EER QQ G K E+ ++AF
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAF 2609
>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 117 SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 278
+ ++++ + + K LR+ K+MP R+D+++Q V YK ++VG+ + R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194
>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
Length = 606
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 57 FNKQVTSSRRKNRKRHFRAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 209
F+ S +K+ +R+F +HI + + +S SK+ ++ K + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174
>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 455 TLVFAKCSQSALCSAIEDCFAVFI 384
T+ + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244
>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
Length = 869
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 317 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFANR 192
L S+N L N+L TI+L NLL + ++N ++ NR
Sbjct: 503 LLSINRLLSINRLLTINLLLSINLLLSINRLLSINLLLSINR 544
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,667,246
Number of Sequences: 59808
Number of extensions: 369899
Number of successful extensions: 1110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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