Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d03r
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 197 8e-51
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 197 8e-51
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 67 1e-11
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 64 7e-11
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 64 7e-11
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 64 7e-11
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 64 7e-11
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 29 3.4
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 29 3.4
Z69718-2|CAA93536.1| 139|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical ... 28 6.0
AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical ... 28 6.0
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical pr... 28 7.9
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 7.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 7.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 197 bits (480), Expect = 8e-51
Identities = 98/189 (51%), Positives = 129/189 (68%), Gaps = 5/189 (2%)
Frame = -1
Query: 676 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 497
L+Y+L+G+G + +GWFL +TSP+MW LGI FS++LSV+GA GI TTG SI+GGGVKA
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85
Query: 496 PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVM 332
PRI+TKNL+S+IFCEAVAI+G+I A V G L ++ P T +++ +N +GY++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145
Query: 331 FGAGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
FG GL VGL NL C LFVKILI+EIF SAIGLFG+I+GI
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILIIEIFASAIGLFGMIIGIVQ 205
Query: 151 TSKVKMGNQ 125
T+K GN+
Sbjct: 206 TNKASFGNK 214
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 197 bits (480), Expect = 8e-51
Identities = 98/189 (51%), Positives = 129/189 (68%), Gaps = 5/189 (2%)
Frame = -1
Query: 676 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 497
L+Y+L+G+G + +GWFL +TSP+MW LGI FS++LSV+GA GI TTG SI+GGGVKA
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85
Query: 496 PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVM 332
PRI+TKNL+S+IFCEAVAI+G+I A V G L ++ P T +++ +N +GY++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145
Query: 331 FGAGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
FG GL VGL NL C LFVKILI+EIF SAIGLFG+I+GI
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILIIEIFASAIGLFGMIIGIVQ 205
Query: 151 TSKVKMGNQ 125
T+K GN+
Sbjct: 206 TNKASFGNK 214
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/150 (27%), Positives = 68/150 (45%)
Frame = -1
Query: 601 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 422
+G+LG+ ++A + G+A G G I V P + K +I V+ VAIYGL+ A
Sbjct: 25 FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84
Query: 421 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 242
+++SG +E +T + Q F GL GL L
Sbjct: 85 VIVSGKVEPAGANYTINNAFSQ--------FAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136
Query: 241 XXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
+FV ++++ IF +GL+G+IV + +
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/150 (27%), Positives = 68/150 (45%)
Frame = -1
Query: 601 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 422
+G+LG+ ++A + G+A G G I V P + K +I V+ VAIYGL+ A
Sbjct: 25 FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84
Query: 421 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 242
+++SG +E +T + Q F GL GL L
Sbjct: 85 VIVSGKVEPAGANYTINNAFSQ--------FAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136
Query: 241 XXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
+FV ++++ IF +GL+G+IV + +
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 64.5 bits (150), Expect = 7e-11
Identities = 45/150 (30%), Positives = 69/150 (46%)
Frame = -1
Query: 601 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 422
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 421 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 242
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 241 XXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
LFV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 64.5 bits (150), Expect = 7e-11
Identities = 45/150 (30%), Positives = 69/150 (46%)
Frame = -1
Query: 601 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 422
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 421 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 242
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 241 XXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
LFV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 64.5 bits (150), Expect = 7e-11
Identities = 45/150 (30%), Positives = 69/150 (46%)
Frame = -1
Query: 601 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 422
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 421 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 242
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 241 XXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
LFV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 64.5 bits (150), Expect = 7e-11
Identities = 45/150 (30%), Positives = 69/150 (46%)
Frame = -1
Query: 601 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 422
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 421 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 242
+VL G + TS S + G+ AGL GL L
Sbjct: 77 MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Query: 241 XXXXLFVKILIVEIFGSAIGLFGLIVGIYM 152
LFV ++++ IF +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +2
Query: 275 TNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGL 454
+N ++ Q + E +S L + + + +QHT SS T +GD
Sbjct: 188 SNDKLSDMTEQIGNNQHLEKLISEKTEKSLSDNETTLKPVPVQHTNSVGSSIGTTSGDSE 247
Query: 455 AEDDGDQIL-----SLDSRCFDTSSHYADTSSV 538
DD + SLD + TSS + +T+SV
Sbjct: 248 ISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 280
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +2
Query: 275 TNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGL 454
+N ++ Q + E +S L + + + +QHT SS T +GD
Sbjct: 229 SNDKLSDMTEQIGNNQHLEKLISEKTEKSLSDNETTLKPVPVQHTNSVGSSIGTTSGDSE 288
Query: 455 AEDDGDQIL-----SLDSRCFDTSSHYADTSSV 538
DD + SLD + TSS + +T+SV
Sbjct: 289 ISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 321
>Z69718-2|CAA93536.1| 139|Caenorhabditis elegans Hypothetical
protein W06D11.3 protein.
Length = 139
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 431 QTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSE 592
+TV+ + + DG++I S ++ +H DTSS D G +D+ N K E
Sbjct: 82 ETVDAEN-EQQDGEKIAS-NTGDAPNITHLVDTSSSDIAGTTDSNNNNDKKTEE 133
>AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical
protein F37C4.4b protein.
Length = 237
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = -1
Query: 568 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 389
++ V A + + T + + G V R +T ++ ++FC A+ L+ I L+ YS
Sbjct: 92 MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 149
Query: 388 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 305
+ V N ++G+++ A +A+G+
Sbjct: 150 K--MKVRTAIGNGLSGFMLL-ASVALGV 174
>AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical
protein F37C4.4a protein.
Length = 249
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = -1
Query: 568 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 389
++ V A + + T + + G V R +T ++ ++FC A+ L+ I L+ YS
Sbjct: 104 MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 161
Query: 388 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 305
+ V N ++G+++ A +A+G+
Sbjct: 162 K--MKVRTAIGNGLSGFMLL-ASVALGV 186
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 284 CCWYRGLWCCSSGCCQRC 231
CC R CC + CC RC
Sbjct: 95 CCCRRCCTCCRTCCCTRC 112
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 284 CCWYRGLWCCSSGCCQRC 231
CC R CC + CC RC
Sbjct: 93 CCCRRCCTCCRTCCCTRC 110
>Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical
protein F59B10.2 protein.
Length = 482
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/89 (24%), Positives = 34/89 (38%)
Frame = +2
Query: 176 KKTNGRSKNLNDEDLDEQGSVGSIR*SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPV 355
K+ R K E S SST T+S S+ ++ SES +E VS
Sbjct: 197 KEQKARKKKEKTPTPTESSFESSSDSSSTSESSTSSESSSSASESESESKSESQVSSSKT 256
Query: 356 LLLDGHTSKWFRIFLQHTREHDSSDQTVN 442
+SK + + + SS T++
Sbjct: 257 STSKASSSKAYGSDFESEKSSSSSASTIS 285
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 284 CCWYRGLWCCSSGCCQRC 231
CC R CC + CC RC
Sbjct: 94 CCCRRCCTCCRTCCCTRC 111
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 284 CCWYRGLWCCSSGCCQRC 231
CC R CC + CC RC
Sbjct: 94 CCCRRCCTCCRTCCCTRC 111
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 284 CCWYRGLWCCSSGCCQRC 231
CC R CC + CC RC
Sbjct: 95 CCCRRCCTCCRTCCCTRC 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,545,438
Number of Sequences: 27780
Number of extensions: 361784
Number of successful extensions: 1372
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -