Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d03r
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    83   3e-18
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 82.6 bits (195), Expect = 3e-18
 Identities = 51/153 (33%), Positives = 76/153 (49%)
 Frame = -1

Query: 601 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 422
           +G +G A ++  S +GAA G   +G  I    V  P +  K++I V+    +AIYGL+ A
Sbjct: 13  FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 72

Query: 421 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 242
           ++++G LE   EP      K      G+V  GAGLAVG   L                  
Sbjct: 73  VLIAGGLE---EP------KGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 241 XXXXLFVKILIVEIFGSAIGLFGLIVGIYMTSK 143
               LFV ++++ IF   +GL+GLIV IY+ +K
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 350 DGGIRDVRRWTRCWLG 303
           DGG  ++  W RC LG
Sbjct: 614 DGGRAEINEWERCNLG 629


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 350 DGGIRDVRRWTRCWLG 303
           DGG  ++  W RC LG
Sbjct: 614 DGGRAEINEWERCNLG 629


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 350 DGGIRDVRRWTRCWLG 303
           DGG  ++  W RC LG
Sbjct: 614 DGGRAEINEWERCNLG 629


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 244 HPLEQHQSPRYQQQFHRIDSPSQQRVQ 324
           HP  Q Q+   QQQ  +   P QQ+ Q
Sbjct: 821 HPQAQAQAQPQQQQQQQQQQPQQQQQQ 847



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 256  QHQSPRYQQQFHRIDSPSQQRVQ 324
            Q Q P+ QQQ  +   P QQ  Q
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQ 1523



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 247  PLEQHQSPRYQQQFHRIDSPSQQR 318
            P +Q   P+ QQQ  +   P QQ+
Sbjct: 1524 PQQQQPQPQQQQQQQQQQQPQQQQ 1547


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 407 TREHDSSDQTVNGDGLAE 460
           TREH S + T++ DG+ E
Sbjct: 349 TREHPSRNFTMSEDGMIE 366


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 90  TLVFKYFLFLSYWLPIFTFDVI 155
           TL     +FL  WLP FT +++
Sbjct: 620 TLAIVLGVFLICWLPFFTCNIM 641


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 545 HGCSDNGQGNGKGDS 589
           +G +DNG GNG  ++
Sbjct: 252 NGANDNGNGNGASNN 266


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 563 GQGNGKGDSEGTPHIRG 613
           G+G+GKG S G    RG
Sbjct: 83  GRGHGKGGSRGRGGNRG 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,793
Number of Sequences: 438
Number of extensions: 4545
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)