Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d03f
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 136 2e-33
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 59 6e-10
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 50 2e-07
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 30 0.34
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 29 0.45
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 1.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 4.2
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 5.5
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 25 9.6
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 9.6
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 9.6
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.6
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 136 bits (330), Expect = 2e-33
Identities = 73/162 (45%), Positives = 91/162 (56%)
Frame = +1
Query: 154 IFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGG 333
I LY + + GE G FL +TSPY WG LGIA VA ++GAA GI G SI+GG
Sbjct: 17 IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76
Query: 334 VKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFG 513
VKAPRIKTKNLIS+IFCE VAIY LI AIV S K ++ + + ++ G+ +F
Sbjct: 77 VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSA---KINDINPAGFYTKSHYYTGFALFW 133
Query: 514 AGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXXFVXILIVEI 639
G+ VGL NL C FV +L+VEI
Sbjct: 134 GGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEI 175
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 58.8 bits (136), Expect = 6e-10
Identities = 33/102 (32%), Positives = 53/102 (51%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G +G ++ + GAA G GV I GV P + KN I V+ +AIYGL+ +
Sbjct: 13 FGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVS 72
Query: 418 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNL 543
+++SG L++ + +G++ GAGL+VGL L
Sbjct: 73 VLISGNLKQILSLY-----------SGFIQLGAGLSVGLAGL 103
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +1
Query: 247 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
LG SV L+ + A I G + V G + PR+ ++ +IF E + +YGLI A++L
Sbjct: 92 LGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151
Query: 427 S 429
+
Sbjct: 152 N 152
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/102 (29%), Positives = 50/102 (49%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G G+ S+ S +GA G G I G P I K+LI V+ + +YGL+ +
Sbjct: 13 FGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMS 72
Query: 418 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNL 543
++++G + P S+ +G++ AGLAVGL +
Sbjct: 73 VLIAGDMS----PDNDYSL-----FSGFIHLSAGLAVGLTGV 105
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 29.9 bits (64), Expect = 0.34
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 609 GSVGSIR*SSTRAHDTNSNSTE*IHQANSESSAEHHV-SRHPVL 481
GSV + SS R + T +NS S+AE+HV SRH V+
Sbjct: 830 GSVSDVSFSSIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVI 873
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 106 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 234
Y L L L+G+ F ++YY L + + +L FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +1
Query: 163 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 342
L + LN K ++ + S + WG S+AL++VGA GI G VG ++
Sbjct: 785 LTFGLNSKDRKLDAKRLTKIVSGFHWGICQNVDSIALNIVGA--GIIRFGTQNVGCLLRI 842
Query: 343 PRIKTKNLI 369
+NLI
Sbjct: 843 EPNYEQNLI 851
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 426 EHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGD 253
E D++ +N A +G +L+ DS +++ +S VD+H S N KG+
Sbjct: 22 EQDAASVKINSTR-ASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGE 78
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 73 TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 180
+ ++N+N+ +R ++S++ + +A SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 391 VAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAG 498
++I + A +LS L Y+EPF +S KQ + G
Sbjct: 74 LSIIAICFACLLSPSLRPYAEPFIFLSYKQPDGSYG 109
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 630 DEDX-DEQGSVGSIR*SST---RAHDTNSNSTE*IHQANSESSAE 508
DED D SV S +S + T SNS E + +NSESS E
Sbjct: 115 DEDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDE 159
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -2
Query: 595 HPLEQHQSPRYQQQFHRIDS 536
HPL QH++P ++ + ++S
Sbjct: 109 HPLSQHKTPEFKHRKRNVES 128
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 372 GDQILSLDSRCFDTSSHYADTSSVDAH 292
GD+ LS S H+AD +S D H
Sbjct: 652 GDEYLSAVSEFIQRCFHFADEASPDGH 678
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 512 PNITYPAIQFCCLTDTL 462
PN + FCC TDTL
Sbjct: 56 PNARFSYSPFCCFTDTL 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,609
Number of Sequences: 5004
Number of extensions: 57726
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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