Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d03f
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 161 3e-40
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 161 3e-40
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 59 3e-09
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 59 3e-09
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 53 2e-07
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 53 2e-07
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 53 2e-07
AF016449-13|AAG24003.1| 350|Caenorhabditis elegans Serpentine r... 31 0.72
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 29 2.9
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 29 2.9
Z69718-2|CAA93536.1| 139|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 28 5.1
AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical ... 28 5.1
AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical ... 28 5.1
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 28 5.1
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 6.7
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.7
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 6.7
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z83238-1|CAB05792.1| 339|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 8.9
U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine rec... 27 8.9
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL034365-6|CAA22263.1| 347|Caenorhabditis elegans Hypothetical ... 27 8.9
AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical ... 27 8.9
AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 161 bits (392), Expect = 3e-40
Identities = 81/164 (49%), Positives = 108/164 (65%), Gaps = 5/164 (3%)
Frame = +1
Query: 163 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 342
L+Y+L+G+G + +GWFL +TSP+MW LGI FS++LSV+GA GI TTG SI+GGGVKA
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85
Query: 343 PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVM 507
PRI+TKNL+S+IFCEAVAI+G+I A V G L ++ P T +++ +N +GY++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145
Query: 508 FGAGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXXFVXILIVEI 639
FG GL VGL NL C FV ILI+EI
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILIIEI 189
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 161 bits (392), Expect = 3e-40
Identities = 81/164 (49%), Positives = 108/164 (65%), Gaps = 5/164 (3%)
Frame = +1
Query: 163 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 342
L+Y+L+G+G + +GWFL +TSP+MW LGI FS++LSV+GA GI TTG SI+GGGVKA
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85
Query: 343 PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVM 507
PRI+TKNL+S+IFCEAVAI+G+I A V G L ++ P T +++ +N +GY++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145
Query: 508 FGAGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXXFVXILIVEI 639
FG GL VGL NL C FV ILI+EI
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILIIEI 189
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G+LG+ ++A + G+A G G I V P + K +I V+ VAIYGL+ A
Sbjct: 25 FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84
Query: 418 IVLSGMLEKYSEPFTSVSVKQQ---NWMAGYVMFGAGLAVGL 534
+++SG +E +T + Q + G GAG A+G+
Sbjct: 85 VIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGI 126
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +1
Query: 127 VLLVGLAIPIFSLYY--VLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGI 300
V++ G+ + I+ L +++GK E + + N G L L +GA I
Sbjct: 70 VVMAGI-VAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGL----VCGLCGLGAGYAI 124
Query: 301 HTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
G + V + PR+ ++ +IF E + +YG+I A++L
Sbjct: 125 GIAGDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G+LG+ ++A + G+A G G I V P + K +I V+ VAIYGL+ A
Sbjct: 25 FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84
Query: 418 IVLSGMLEKYSEPFTSVSVKQQ---NWMAGYVMFGAGLAVGL 534
+++SG +E +T + Q + G GAG A+G+
Sbjct: 85 VIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGI 126
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +1
Query: 127 VLLVGLAIPIFSLYY--VLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGI 300
V++ G+ + I+ L +++GK E + + N G L L +GA I
Sbjct: 70 VVMAGI-VAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGL----VCGLCGLGAGYAI 124
Query: 301 HTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
G + V + PR+ ++ +IF E + +YG+I A++L
Sbjct: 125 GIAGDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 418 IVLSGMLEKYSEPF---TSVSVKQQNWMAGYVMFGAGLAVGLV 537
+VL G + S + + G GAG A+G+V
Sbjct: 77 MVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIV 119
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +1
Query: 115 SYLFVLLVGLAIPIFSLYY--VLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGA 288
S + V++ G+ I I+ L VL GK S G+ L + L + L +GA
Sbjct: 58 SVIPVIMAGI-IGIYGLVVAMVLKGKVTSASAGYDLNKGFAH----LAAGLTCGLCGLGA 112
Query: 289 AMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
I G + V G + PR+ ++ +IF E + +YG+I A++L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 418 IVLSGMLEKYSEPF---TSVSVKQQNWMAGYVMFGAGLAVGLV 537
+VL G + S + + G GAG A+G+V
Sbjct: 77 MVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIV 119
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +1
Query: 115 SYLFVLLVGLAIPIFSLYY--VLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGA 288
S + V++ G+ I I+ L VL GK S G+ L + L + L +GA
Sbjct: 58 SVIPVIMAGI-IGIYGLVVAMVLKGKVTSASAGYDLNKGFAH----LAAGLTCGLCGLGA 112
Query: 289 AMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
I G + V G + PR+ ++ +IF E + +YG+I A++L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 418 IVLSGMLEKYSEPF---TSVSVKQQNWMAGYVMFGAGLAVGLV 537
+VL G + S + + G GAG A+G+V
Sbjct: 77 MVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIV 119
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +1
Query: 115 SYLFVLLVGLAIPIFSLYY--VLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGA 288
S + V++ G+ I I+ L VL GK S G+ L + L + L +GA
Sbjct: 58 SVIPVIMAGI-IGIYGLVVAMVLKGKVTSASAGYDLNKGFAH----LAAGLTCGLCGLGA 112
Query: 289 AMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
I G + V G + PR+ ++ +IF E + +YG+I A++L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G +G A + +V+GAA G + V I GV P + K++I VI + IYGL+ A
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76
Query: 418 IVLSGMLEKYSEPF---TSVSVKQQNWMAGYVMFGAGLAVGLV 537
+VL G + S + + G GAG A+G+V
Sbjct: 77 MVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIV 119
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +1
Query: 115 SYLFVLLVGLAIPIFSLYY--VLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGA 288
S + V++ G+ I I+ L VL GK S G+ L + L + L +GA
Sbjct: 58 SVIPVIMAGI-IGIYGLVVAMVLKGKVTSASAGYDLNKGFAH----LAAGLTCGLCGLGA 112
Query: 289 AMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
I G + V G + PR+ ++ +IF E + +YG+I A++L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
>AF016449-13|AAG24003.1| 350|Caenorhabditis elegans Serpentine
receptor, class t protein8 protein.
Length = 350
Score = 31.1 bits (67), Expect = 0.72
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Frame = +1
Query: 106 YFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVA----- 270
YFL +L VL + L IP++ L VL+ + +SL + + + ++ +GI+F
Sbjct: 52 YFLCFLAVLKLNLKIPVYQLMLVLS-IFDILSLS--VNSVATGIFDIIGISFCQCPHAIF 108
Query: 271 -LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLS 429
L +G A + + SI+ + I K ++ +F + V L T I+ S
Sbjct: 109 FLGAIGQASWMSGSACSILLAVERCVEINPKFILERLFRKRVFCCVLATIIIYS 162
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = -3
Query: 564 TNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGL 385
+N ++ Q + E +S L + + + +QHT SS T +GD
Sbjct: 188 SNDKLSDMTEQIGNNQHLEKLISEKTEKSLSDNETTLKPVPVQHTNSVGSSIGTTSGDSE 247
Query: 384 AEDDGDQIL-----SLDSRCFDTSSHYADTSSV 301
DD + SLD + TSS + +T+SV
Sbjct: 248 ISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 280
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = -3
Query: 564 TNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGL 385
+N ++ Q + E +S L + + + +QHT SS T +GD
Sbjct: 229 SNDKLSDMTEQIGNNQHLEKLISEKTEKSLSDNETTLKPVPVQHTNSVGSSIGTTSGDSE 288
Query: 384 AEDDGDQIL-----SLDSRCFDTSSHYADTSSV 301
DD + SLD + TSS + +T+SV
Sbjct: 289 ISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 321
>Z69718-2|CAA93536.1| 139|Caenorhabditis elegans Hypothetical
protein W06D11.3 protein.
Length = 139
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 408 QTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSE 247
+TV+ + + DG++I S ++ +H DTSS D G +D+ N K E
Sbjct: 82 ETVDAEN-EQQDGEKIAS-NTGDAPNITHLVDTSSSDIAGTTDSNNNNDKKTEE 133
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 112 LSYLFVLLVGLAIPIFSLYYVLNGKG 189
L + LL LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627
>AF036705-2|AAM98021.1| 237|Caenorhabditis elegans Hypothetical
protein F37C4.4b protein.
Length = 237
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = +1
Query: 271 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 450
++ V A + + T + + G V R +T ++ ++FC A+ L+ I L+ YS
Sbjct: 92 MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 149
Query: 451 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 534
+ V N ++G+++ A +A+G+
Sbjct: 150 K--MKVRTAIGNGLSGFMLL-ASVALGV 174
>AF036705-1|AAB95170.1| 249|Caenorhabditis elegans Hypothetical
protein F37C4.4a protein.
Length = 249
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = +1
Query: 271 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 450
++ V A + + T + + G V R +T ++ ++FC A+ L+ I L+ YS
Sbjct: 104 MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 161
Query: 451 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 534
+ V N ++G+++ A +A+G+
Sbjct: 162 K--MKVRTAIGNGLSGFMLL-ASVALGV 186
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 112 LSYLFVLLVGLAIPIFSLYYVLNGKG 189
L + LL LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 555 CCWYRGLWCCSSGCCQRC 608
CC R CC + CC RC
Sbjct: 95 CCCRRCCTCCRTCCCTRC 112
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 555 CCWYRGLWCCSSGCCQRC 608
CC R CC + CC RC
Sbjct: 93 CCCRRCCTCCRTCCCTRC 110
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 555 CCWYRGLWCCSSGCCQRC 608
CC R CC + CC RC
Sbjct: 94 CCCRRCCTCCRTCCCTRC 111
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 555 CCWYRGLWCCSSGCCQRC 608
CC R CC + CC RC
Sbjct: 94 CCCRRCCTCCRTCCCTRC 111
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 555 CCWYRGLWCCSSGCCQRC 608
CC R CC + CC RC
Sbjct: 95 CCCRRCCTCCRTCCCTRC 112
>Z83238-1|CAB05792.1| 339|Caenorhabditis elegans Hypothetical
protein T08G3.1 protein.
Length = 339
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/106 (16%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Frame = +1
Query: 235 MWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLIT 414
++ T+G+ F++ ++ A G+H+ + + P +K ++V+ ++Y
Sbjct: 46 LFSTVGVLFALLEFLLYPASGLHSHSAAYIVYINNRPFDASKEFLTVLLAVYCSLYCAAI 105
Query: 415 AIVLSGMLEKYSEPFTSVSVKQQN------WMAGYVMFGAGLAVGL 534
+++ + +Y F + +K N W+ V+ G +G+
Sbjct: 106 SLLAVQFIYRYIAVFCPIHLKYFNKCYLLIWIFYAVLIGVEWGIGI 151
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 79 YLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVL 177
Y++ LK+R F L++L +IP+F L+YVL
Sbjct: 50 YVHVTLKIRLFHRNLYIL----SIPVFFLWYVL 78
>U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine
receptor, class h protein200 protein.
Length = 343
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 64 KNSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVL 177
KN+ NL+ ++F++ L L+V L F +YVL
Sbjct: 229 KNTMSRRTFNLQRKFFITLLIQLIVPLVFFFFPSFYVL 266
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -3
Query: 585 SSTRAHDT-NSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHTR--EHDS 415
+ HD N+N E + ++S SS H++R V +G +SK + ++ + EH
Sbjct: 309 AKNEVHDQKNTNGYENANTSSSSSSVTAHIARSTVSEEEGTSSKSEEVAIEDSSKFEHQE 368
Query: 414 SDQTVNGDGLAE 379
+V+ G E
Sbjct: 369 PSTSVDVVGYVE 380
>AL034365-6|CAA22263.1| 347|Caenorhabditis elegans Hypothetical
protein Y69E1A.6 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.9
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +1
Query: 82 LNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAF 261
L+ +++M FL L++ + + I + Y+V++ G+ L + S W + +
Sbjct: 94 LSSHIQMAMFLLLLYLQVASIVCAIVTKYHVVSNIGK-------LSDRSILFWIFVIVYH 146
Query: 262 SVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTK--NLISVIFCEAVAIYGL 408
A + G VS + + IKTK N ISV E VAIY L
Sbjct: 147 GCAFVITGFF------SVSCLARQEEENLIKTKFPNAISVFTLENVAIYDL 191
>AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical
protein C50D2.2 protein.
Length = 589
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 244 TLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIV 423
++G F + S+VG + S+ G+ + + N + + +A+ I+G +TAI+
Sbjct: 320 SVGALFGMTTSLVGGMFALPRCVFSMADDGLLFSSLASVNPKTQVPTQALLIFGFLTAII 379
>AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical
protein Y102A11A.7 protein.
Length = 172
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 564 YRGLWCCSSGCC 599
YR + CC+SGCC
Sbjct: 72 YRDIGCCASGCC 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,272,944
Number of Sequences: 27780
Number of extensions: 335505
Number of successful extensions: 1330
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -