Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d03f
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    62   3e-12
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.84 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.8  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 62.5 bits (145), Expect = 3e-12
 Identities = 37/102 (36%), Positives = 54/102 (52%)
 Frame = +1

Query: 238 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 417
           +G +G A ++  S +GAA G   +G  I    V  P +  K++I V+    +AIYGL+ A
Sbjct: 13  FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 72

Query: 418 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNL 543
           ++++G LE   EP      K      G+V  GAGLAVG   L
Sbjct: 73  VLIAGGLE---EP------KGYTLFKGFVHLGAGLAVGFSGL 105



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +1

Query: 247 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
           LG   +V  S + A   I   G + V G  + PR+    ++ +IF E + +YGLI AI L
Sbjct: 94  LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 153


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 598  QHPLEQHQSPRYQQQFHRIDSPSQQR 521
            Q P +Q   P+ QQQ  +   P QQ+
Sbjct: 1522 QQPQQQQPQPQQQQQQQQQQQPQQQQ 1547



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 595 HPLEQHQSPRYQQQFHRIDSPSQQRVQ 515
           HP  Q Q+   QQQ  +   P QQ+ Q
Sbjct: 821 HPQAQAQAQPQQQQQQQQQQPQQQQQQ 847



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 598  QHPLEQHQSPRYQQQFHRIDSPSQQRVQ 515
            Q P +Q Q  + QQ   +   P QQ+ Q
Sbjct: 1503 QQPQQQQQQQQQQQPQQQSQQPQQQQPQ 1530



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 583  QHQSPRYQQQFHRIDSPSQQRVQ 515
            Q Q P+ QQQ  +   P QQ  Q
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQ 1523



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 598  QHPLEQHQSPRYQQQFHRIDSPSQQRVQ 515
            Q P +Q Q P+ QQ   +     QQ+ Q
Sbjct: 1515 QQPQQQSQQPQQQQPQPQQQQQQQQQQQ 1542


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 489 DGGIRDVRRWTRCWLG 536
           DGG  ++  W RC LG
Sbjct: 614 DGGRAEINEWERCNLG 629


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 489 DGGIRDVRRWTRCWLG 536
           DGG  ++  W RC LG
Sbjct: 614 DGGRAEINEWERCNLG 629


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 489 DGGIRDVRRWTRCWLG 536
           DGG  ++  W RC LG
Sbjct: 614 DGGRAEINEWERCNLG 629


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 432 TREHDSSDQTVNGDGLAE 379
           TREH S + T++ DG+ E
Sbjct: 349 TREHPSRNFTMSEDGMIE 366


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
 Frame = +1

Query: 109 FLSYL-FVLLVGLAIPIFSLYYVLNG--------KGEQISLGWFLENTS 228
           F S+L F+LLV +A+ +++   V N         K ++I  G+FL + S
Sbjct: 84  FASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSES 132


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 294 HGCSDNGQGNGKGDS 250
           +G +DNG GNG  ++
Sbjct: 252 NGANDNGNGNGASNN 266


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 276 GQGNGKGDSEGTPHIRG 226
           G+G+GKG S G    RG
Sbjct: 83  GRGHGKGGSRGRGGNRG 99


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 124 FVLLVGLAIPIFSLYYVL 177
           F +L G+A+   +LYY L
Sbjct: 5   FEILCGIAVLFLALYYYL 22


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 97  KMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISL 204
           K  ++   L +  VG++     ++Y+ +  GE++SL
Sbjct: 235 KTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSL 270


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 97  KMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISL 204
           K  ++   L +  VG+      ++Y+ +  GE++SL
Sbjct: 248 KTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSL 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,598
Number of Sequences: 438
Number of extensions: 4428
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)