Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d03f
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP... 121 5e-28
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su... 120 1e-27
At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipi... 60 2e-09
At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipi... 58 4e-09
At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipi... 58 4e-09
At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipi... 58 4e-09
At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipi... 58 4e-09
At1g47670.1 68414.m05296 amino acid transporter family protein s... 35 0.055
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain... 31 0.67
At3g61280.1 68416.m06858 expressed protein ; expression supporte... 30 1.2
At3g48980.1 68416.m05350 expressed protein 29 2.1
At2g45840.1 68415.m05701 expressed protein 29 2.1
At5g13250.1 68418.m01522 hypothetical protein 29 2.7
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 29 3.6
At1g77980.1 68414.m09087 MADS-box family protein MADS-box protei... 28 4.8
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ... 28 6.3
At3g13672.1 68416.m01723 seven in absentia (SINA) family protein... 28 6.3
At3g02690.1 68416.m00260 integral membrane family protein simila... 28 6.3
At5g10810.1 68418.m01256 enhancer of rudimentary protein, putati... 27 8.3
At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel... 27 8.3
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 8.3
>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
cerevisiae}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 180
Score = 121 bits (291), Expect = 5e-28
Identities = 67/151 (44%), Positives = 88/151 (58%)
Frame = +1
Query: 187 GEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNL 366
G S G L SPY + +GIA S+ +SV+GAA GI+ TG S++G ++APRI +KNL
Sbjct: 8 GHASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNL 67
Query: 367 ISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLF 546
ISVIFCEAVAIYG+I AI+L LE S P +S ++ AGY +F +G+ VG NL
Sbjct: 68 ISVIFCEAVAIYGVIVAIILQTKLE--SVP-SSKMYDAESLRAGYAIFASGIIVGFANLV 124
Query: 547 CXXXXXXXXXXXXXXXXXXXXXFVXILIVEI 639
C FV IL++EI
Sbjct: 125 CGLCVGIIGSSCALSDAQNSTLFVKILVIEI 155
>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
subunit family protein similar to SP|P23968 Vacuolar ATP
synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00137: ATP synthase subunit C
Length = 178
Score = 120 bits (288), Expect = 1e-27
Identities = 66/147 (44%), Positives = 87/147 (59%)
Frame = +1
Query: 199 SLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVI 378
S G L SPY + +GIA S+ +SV+GAA GI+ TG S++G ++APRI +KNLISVI
Sbjct: 10 SWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVI 69
Query: 379 FCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXX 558
FCEAVAIYG+I AI+L LE S P +S ++ AGY +F +G+ VG NL C
Sbjct: 70 FCEAVAIYGVIVAIILQTKLE--SVP-SSKMYDAESLRAGYAIFASGIIVGFANLVCGLC 126
Query: 559 XXXXXXXXXXXXXXXXXXFVXILIVEI 639
FV IL++EI
Sbjct: 127 VGIIGSSCALSDAQNSTLFVKILVIEI 153
>At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipid
subunit 4 / V-ATPase 16 kDa proteolipid subunit 4
(AVAP4) (AVA-P4) identical to SP|P59229 Vacuolar ATP
synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 4) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 166
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Frame = +1
Query: 199 SLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVI 378
S G+ + T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+
Sbjct: 3 SSGFSGDETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 61
Query: 379 FCEAVAIYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 537
+ IYGLI A+++S + ++ F + G AG+A+G+V
Sbjct: 62 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIV 117
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 247 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
L + L+ + A M I G + V + P++ ++ +IF EA+A+YGLI I+L
Sbjct: 97 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 156
Query: 427 S 429
S
Sbjct: 157 S 157
>At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipid
subunit 3 / V-ATPase 16 kDa proteolipid subunit 3
(AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +1
Query: 217 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 396
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 7 DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65
Query: 397 IYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 537
IYGLI A+++S + ++ F + G AG+A+G+V
Sbjct: 66 IYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIV 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 247 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
L + L+ + A M I G + V + P++ ++ +IF EA+A+YGLI I+L
Sbjct: 95 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 154
Query: 427 S 429
S
Sbjct: 155 S 155
>At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipid
subunit 1 / V-ATPase 16 kDa proteolipid subunit 1
(AVAP1) (AVA-P1) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +1
Query: 217 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 396
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 7 DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65
Query: 397 IYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 537
IYGLI A+++S + ++ F + G AG+A+G+V
Sbjct: 66 IYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIV 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 247 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
L + L+ + A M I G + V + P++ ++ +IF EA+A+YGLI I+L
Sbjct: 95 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 154
Query: 427 S 429
S
Sbjct: 155 S 155
>At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipid
subunit 5 / V-ATPase 16 kDa proteolipid subunit 5
(AVAP5) identical to SP|P59227 Vacuolar ATP synthase 16
kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16
kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}
GI:926929; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +1
Query: 217 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 396
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 7 DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65
Query: 397 IYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 537
IYGLI A+++S + ++ F + G AG+A+G+V
Sbjct: 66 IYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIV 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 247 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
L + L+ + A M I G + V + P++ ++ +IF EA+A+YGLI I+L
Sbjct: 95 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 154
Query: 427 S 429
S
Sbjct: 155 S 155
>At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipid
subunit 2 / V-ATPase 16 kDa proteolipid subunit 2
(AVAP2) (AVA-P2) identical to SP|Q39039 Vacuolar ATP
synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 2 {Arabidopsis
thaliana}, nearly identical to vacuolar H+-ATPase
proteolipid (16 kDa) subunit GI:755147 from [Gossypium
hirsutum]
Length = 165
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +1
Query: 217 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 396
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 8 DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66
Query: 397 IYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 537
IYGLI A+++S + ++ F + G AG+A+G+V
Sbjct: 67 IYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIV 116
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 247 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
L + L+ + A M I G + V + P++ ++ +IF EA+A+YGLI I+L
Sbjct: 96 LSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Query: 427 S 429
S
Sbjct: 156 S 156
>At1g47670.1 68414.m05296 amino acid transporter family protein
similar to lysine and histidine specific transporter
GI:2576361 from [Arabidopsis thaliana]; contains Pfam
profile PF01490: Transmembrane amino acid transporter
protein
Length = 519
Score = 34.7 bits (76), Expect = 0.055
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 109 FLSYLFVLLVGLAIPIFSLY----YVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALS 276
FLS L LL GL +P+ Y +VL K + S W+ + G LG+AFS+A S
Sbjct: 443 FLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFH----WGLGWLGVAFSLAFS 498
Query: 277 VVGAAMGIHTTGVSI 321
+G + T G+ +
Sbjct: 499 -IGGIWSMVTNGLKL 512
>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471;contains Pfam PF00917: Meprin And
TRAF-Homology (MATH) domain
Length = 1052
Score = 31.1 bits (67), Expect = 0.67
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = -3
Query: 420 DSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGT 241
D SD + + DG A+ IL D D+SS DT +++ H S G G+G S T
Sbjct: 490 DVSDISDSVDGSAD-----ILQPDLEDRDSSSVLWDTDALEIHPPSSEGSSRGRGISIST 544
Query: 240 PH 235
P+
Sbjct: 545 PN 546
>At3g61280.1 68416.m06858 expressed protein ; expression supported
by MPSS
Length = 338
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 28 GEKRPSLSGLTGKNSTKYLNQNLKMRYFLSYLFVLLVG 141
G + + G+ ++Y+ +NLKM+Y Y+ +L G
Sbjct: 211 GNNNTEKAQIIGRQGSEYMMKNLKMKYVYDYMLYVLQG 248
>At3g48980.1 68416.m05350 expressed protein
Length = 539
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 61 GKNSTKYLNQNLKMRYFLSYLFVLLV 138
GK +++++ Q LKM Y Y+F LL+
Sbjct: 423 GKKASEFVQQELKMDYVYDYMFHLLI 448
>At2g45840.1 68415.m05701 expressed protein
Length = 523
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 61 GKNSTKYLNQNLKMRYFLSYLFVLL 135
G+N + Y+ +NLKM+Y Y+ LL
Sbjct: 405 GRNGSGYVRKNLKMKYVYDYMLHLL 429
>At5g13250.1 68418.m01522 hypothetical protein
Length = 286
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -3
Query: 624 DXDEQGSVGSIR*SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPVLLLD-GHTSKWFR 448
D +E S S S HD NSN+ I+ N+ + +H + + L L GH +
Sbjct: 76 DQEEPRSTTSRLSSKEDDHDNNSNNNN-INNNNNNEAEDHEMRQQGWLRLSLGHEED-VK 133
Query: 447 IFLQHTREHDSSDQTVNGDGLAE 379
L H ++H +D T D E
Sbjct: 134 PDLDHRQQH-QTDPTARRDSFLE 155
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Frame = +3
Query: 534 GESILWNCCWYRGLWCCSSG--CC 599
G+ W CC Y CC G CC
Sbjct: 383 GKCYSWGCCPYESATCCDDGSSCC 406
>At1g77980.1 68414.m09087 MADS-box family protein MADS-box protein
AGL66
Length = 332
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 351 DSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGTPHIRGSVLQEPSQTY 196
++ FD S+H A ++ S + Q N G+S + H G + QE +Q Y
Sbjct: 224 EAHLFDASAHSAMYETLLQGSSSSSNQNNIMGESNVSNH-NGDMFQEWAQAY 274
>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 470
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 291 HGHPHYWCQHSGRRCQS 341
H HP YW S +RCQ+
Sbjct: 308 HPHPLYWTLESSKRCQA 324
>At3g13672.1 68416.m01723 seven in absentia (SINA) family protein
low similarity to SP|P21461 Developmental protein seven
in absentia {Drosophila melanogaster}; contains Pfam
profile PF03145: Seven in absentia protein family
Length = 216
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 225 FPVYVGYPRNRLFRCPVRCRSSHGHPHYWCQHSGRRCQST 344
FPV+ + ++ CP + Y C HSG +C T
Sbjct: 20 FPVHTNQISSAIYECPNDHIENPKKKPYNCPHSGAKCDVT 59
>At3g02690.1 68416.m00260 integral membrane family protein similar
to PecM protein (GI:5852331) {Vogesella indigofera} and
PecM protein (SP:P42194) [Erwinia chrysanthemi]
Length = 417
Score = 27.9 bits (59), Expect = 6.3
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Frame = +1
Query: 172 VLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVG----AAMGIHTTGVSIVGGGVK 339
+L+G GE L W + + + WGT +A L + G AA + G+ +V V
Sbjct: 114 ILSG-GEGTFLEWTVLISPFFFWGTAMVAMKEVLPITGPFFVAAFRLIPAGLLLVAFAVY 172
Query: 340 APRIKTKNLISVIFCEAVAIYGLITAIVLSGM----LEKYSEPFTSVSVKQQN-WMAGYV 504
R + I+ F ++A++ L+ A G L++ S SV + Q +A
Sbjct: 173 KGRPLPEG-INAWF--SIALFALVDATCFQGFLAQGLQRTSAGLGSVIIDSQPLTVAVLA 229
Query: 505 MFGAGLAVGLV 537
F G ++G+V
Sbjct: 230 SFLFGESIGIV 240
>At5g10810.1 68418.m01256 enhancer of rudimentary protein, putative
identical to enhancer of rudimentary homolog SP:Q96319
from [Arabidopsis thaliana]; contains Pfam profile:
PF01133 enhancer of rudimentary
Length = 109
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 513 AEHHVSRHPVLLLDGHTSKWFRIFLQHTREHDSSDQTVNG 394
A H+ SRH ++LL S+ R F+ ++DS Q ++G
Sbjct: 2 ANHNSSRHTIILLQNSPSRATRTFM----DYDSIGQAMDG 37
>At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel,
putative (CNGC14) similar to cyclic nucleotide and
calmodulin-regulated ion channel (GI:4581205)
[Arabidopsis thaliana]
Length = 726
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 361 NLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNW 489
+++ +F VAI+GL+ +L G ++ Y + S++V+ + W
Sbjct: 373 SVLETMFAILVAIFGLVLFALLIGNMQTYLQ---SITVRLEEW 412
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = -3
Query: 444 FLQHTREHDSSDQTVNGD-GLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQG 268
+L + D D + D G +EDDG+ S S D D+G G
Sbjct: 124 YLGDVSDDDGEDSHSDHDLGASEDDGEDSHSDHDLGASDDDGEDSHSDHDLGARDDDGNG 183
Query: 267 NGKGD 253
NG GD
Sbjct: 184 NGAGD 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,435
Number of Sequences: 28952
Number of extensions: 320321
Number of successful extensions: 1237
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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