Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d02r
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    30   0.38 
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   8.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   8.2  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   8.2  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.2  

>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 241 CDFDFYFVQSFECLTVFIVISYYY 170
           C   +YF Q   CLTVF  +++YY
Sbjct: 34  CSLQYYFDQMAMCLTVFSQMNHYY 57


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 316 EFNILMQVISKYCTIKITFMT*SRVCDFDFYFVQSFECLTVFIVISYYY 170
           EFNI+++       I    M  +   D  FYF +  +C+  +   +Y Y
Sbjct: 223 EFNIIVREDGTAVVIDFPQMVSTSHPDAQFYFDRDVQCIVQYFEKNYQY 271


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 464 LRFYTVTKPSPATTTNLI--LSDFGSVIIRH*TTTETSTLKIIKSHLYLII 610
           L +Y  + P+P+  +  +  L DF S  I    +   + L ++KSH  LI+
Sbjct: 371 LLYYINSHPNPSVASTAVKALGDFASANISMAPSCLNTLLLLLKSHNSLIV 421


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 325 YPVEFNILMQVISKYCTIKITFMT*SRVCDFDF--YFVQSFECLTVFIVISYYYVEN 161
           Y    NI++  +  YCT +  +   S++C+F    Y+ +    L + + +  Y +E+
Sbjct: 300 YCQAMNIVLAALLVYCTEEQAYFLFSQLCEFYIPGYYAKIIHGLLLDLTVFEYVLEH 356


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 397 YTVLTNT-RLNTSMSSENLKRSSTPFLYSNKAFSSYYN 507
           Y  LTNT R+N  M S  L        Y NK+F+SYY+
Sbjct: 452 YMSLTNTLRINEYMQSAMLN-------YLNKSFNSYYH 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,612
Number of Sequences: 5004
Number of extensions: 47428
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)