Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d02f
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    38   0.001
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    38   0.001
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    31   0.098
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.7  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    26   4.9  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   6.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   8.5  

>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = +2

Query: 185 ISNTEISWMLGLNPIGFLIGSFTARFVIDKFGRRYTLLASMXXXXXXXXXXXXXTIGWML 364
           +S+     + G+  +G L G   +  + D+FG+R +++                   W+ 
Sbjct: 57  LSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQ 116

Query: 365 MMTQFLWS-FGTAILCTVQGIYFAEIADKDIRGTLSLSTRYMFNLGNLLV 511
           +M   +W+  G   L  +   Y +E A   IRGT+ + T  +F  G + +
Sbjct: 117 IMVAKIWTGIGIGALSVLAPGYQSETAPPSIRGTV-VVTYQLFVTGGIFI 165


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/111 (20%), Positives = 46/111 (41%)
 Frame = +2

Query: 185 ISNTEISWMLGLNPIGFLIGSFTARFVIDKFGRRYTLLASMXXXXXXXXXXXXXTIGWML 364
           ++N    ++     +G L+G   A  + D FGR+  +  +                 W +
Sbjct: 124 LTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHM 183

Query: 365 MMTQFLWSFGTAILCTVQGIYFAEIADKDIRGTLSLSTRYMFNLGNLLVIG 517
           ++ +F+  +G  I   +  +Y +EIA   IRG L +    +   G ++  G
Sbjct: 184 IVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAYG 234


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 31.5 bits (68), Expect = 0.098
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
 Frame = +2

Query: 215 GLNPIGFLIGSFTARFVIDKFGRRYTLLASMXXXXXXXXXXXXXTIGWMLMMTQFLWS-F 391
           G+  +G   G   +    D+ G+R +++                   W+ +M   +W+  
Sbjct: 63  GMVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVIIQVTAVPSWVQIMVAKIWTGL 122

Query: 392 GTAILCTVQGIYFAEIADKDIRGTLSLSTRYMFNLGNLLV--IGAGPFISYQT 544
           G   L  +   Y +E+A   IRGT+ ++ +     G  +   I  G    Y+T
Sbjct: 123 GIGALSVLAPGYQSEVAPPHIRGTIVVTYQLCVTAGIFIAACINMGTHKLYKT 175


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -1

Query: 528 NGPAPMTRRFPRLNMYLVDNERVPLMSLSAISAKYIPWTVQRIAVPKLHKNCV 370
           N     T+ FP    Y    E  PL S    S    P+T+   A+   HK+ +
Sbjct: 94  NASFSKTKSFPSSVTYSPSEETFPLTSGMNKSVHEYPFTLSESAISSSHKSSI 146


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 319 RWNGHSRIRYNRLDAYDDAILVELW 393
           +WN  SR+ + + D  D A++   W
Sbjct: 214 KWNNGSRVEFKKDDMADSALIASGW 238


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 273 LSITKRAVKLPIRNPIGFSPSIHDISVLEITTEVSLL*NFSNTGVGHAEHAPTAK 109
           L +TKR  KL +   +GF    +D+ ++ + T +     F     G  E  PT K
Sbjct: 38  LGLTKREFKLMMLAGVGFFLDSYDLFIINLVTPI-----FEYLYWGGIEKGPTGK 87


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 499 ESSSHRCWPIHKLSNTKLV 555
           ++++  CW +HKL N  L+
Sbjct: 441 KNTAEECWRLHKLRNDSLI 459


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 122 ACSAWPTPVLLKFHNNE 172
           +C +WP+P+ +KF+  +
Sbjct: 305 SCQSWPSPLYVKFNGGD 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,547
Number of Sequences: 5004
Number of extensions: 52317
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)