Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c23r
(471 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plu... 29 1.7
AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 1.7
AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 1.7
Z70038-4|CAA93881.1| 427|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81147-10|CAB03533.3| 671|Caenorhabditis elegans Hypothetical p... 28 3.9
Z54327-12|CAD56557.1| 543|Caenorhabditis elegans Hypothetical p... 27 5.1
Z54327-11|CAD56556.1| 589|Caenorhabditis elegans Hypothetical p... 27 5.1
Z54307-8|CAD56577.1| 543|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54307-7|CAD56576.1| 589|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54307-5|CAD56575.1| 513|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54307-4|CAD56574.1| 510|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54307-3|CAD56573.1| 516|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54307-2|CAD56572.1| 503|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54307-1|CAA91092.2| 493|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z81540-8|CAB04407.2| 326|Caenorhabditis elegans Hypothetical pr... 27 6.8
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 27 6.8
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 27 6.8
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 6.8
Z78198-2|CAB01567.1| 296|Caenorhabditis elegans Hypothetical pr... 27 9.0
>U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plus
homeodomain, axonguidance protein 1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 404 PSRITPFNPFQIPLLNTIIL 345
PS +TPFNP+Q+ + I+L
Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101
>AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 404 PSRITPFNPFQIPLLNTIIL 345
PS +TPFNP+Q+ + I+L
Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101
>AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 404 PSRITPFNPFQIPLLNTIIL 345
PS +TPFNP+Q+ + I+L
Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101
>Z70038-4|CAA93881.1| 427|Caenorhabditis elegans Hypothetical
protein ZK1067.5 protein.
Length = 427
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 278 KQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIAT-GFHGIHVIIGTLFLLIC 102
+Q L L LLG+ Y +E ++ D Y + T GF +H +GT+ ++C
Sbjct: 292 RQLLVLVFLLGYMTISACVYTILEPMWSFLDSFYFCLVSLLTVGFGDLHP-VGTVEYMLC 350
Query: 101 YI 96
I
Sbjct: 351 SI 352
>Z81147-10|CAB03533.3| 671|Caenorhabditis elegans Hypothetical
protein T09E11.4 protein.
Length = 671
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 309 LIDRK*LLTNKTKIIFNYFIRILFYYFTSI 220
LID + LL NKT F YF F YFT++
Sbjct: 619 LIDYEPLLFNKTTNRFEYFDSRGFLYFTAV 648
>Z54327-12|CAD56557.1| 543|Caenorhabditis elegans Hypothetical
protein F14F11.1c protein.
Length = 543
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 309 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 365
>Z54327-11|CAD56556.1| 589|Caenorhabditis elegans Hypothetical
protein F14F11.1b protein.
Length = 589
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 355 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 411
>Z54307-8|CAD56577.1| 543|Caenorhabditis elegans Hypothetical
protein F14F11.1c protein.
Length = 543
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 309 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 365
>Z54307-7|CAD56576.1| 589|Caenorhabditis elegans Hypothetical
protein F14F11.1b protein.
Length = 589
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 355 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 411
>Z54307-5|CAD56575.1| 513|Caenorhabditis elegans Hypothetical
protein F14F11.1g protein.
Length = 513
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 279 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 335
>Z54307-4|CAD56574.1| 510|Caenorhabditis elegans Hypothetical
protein F14F11.1f protein.
Length = 510
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 276 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 332
>Z54307-3|CAD56573.1| 516|Caenorhabditis elegans Hypothetical
protein F14F11.1e protein.
Length = 516
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 282 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 338
>Z54307-2|CAD56572.1| 503|Caenorhabditis elegans Hypothetical
protein F14F11.1d protein.
Length = 503
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 269 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 325
>Z54307-1|CAA91092.2| 493|Caenorhabditis elegans Hypothetical
protein F14F11.1a protein.
Length = 493
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -2
Query: 221 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTL----FL-LICYIR--HLNNHFS 72
++++ + TI D I FF + H I + G+L FL +IC +R L HFS
Sbjct: 259 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLRLFKLTQHFS 315
>Z81540-8|CAB04407.2| 326|Caenorhabditis elegans Hypothetical
protein F46B3.11 protein.
Length = 326
Score = 27.1 bits (57), Expect = 6.8
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Frame = -2
Query: 314 HHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIH 135
HHS I + + L +L G + Q Y Y+ F I R T
Sbjct: 7 HHSQIPYDIVSFGFQTILIVLAGLQIVVYQFYSYV---FKINQRRDKETLLFPITNCFYK 63
Query: 134 VIIGTLFLLICYIRHLN--NHFSKNHHF 57
+I LIC+I L NH + ++F
Sbjct: 64 IIKALTRSLICFIVFLTVFNHTTSKYYF 91
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 398 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 285
R+ PFN +I + +L +G T T HS+ + NFS
Sbjct: 9 RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 398 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 285
R+ PFN +I + +L +G T T HS+ + NFS
Sbjct: 9 RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 398 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 285
R+ PFN +I + +L +G T T HS+ + NFS
Sbjct: 9 RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46
>Z78198-2|CAB01567.1| 296|Caenorhabditis elegans Hypothetical
protein F55C5.2 protein.
Length = 296
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 160 MKKVDP*ILSAIVKEASIYSYA 225
+KK+DP I++ I + S YSY+
Sbjct: 173 LKKIDPKIITGITVDRSYYSYS 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,160,968
Number of Sequences: 27780
Number of extensions: 169159
Number of successful extensions: 550
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -