Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c23r
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...   173   5e-44
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   2.1  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   2.1  
At2g06090.1 68415.m00668 self-incompatibility protein-related si...    29   2.1  
At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate mu...    25   3.6  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score =  173 bits (421), Expect = 5e-44
 Identities = 87/155 (56%), Positives = 102/155 (65%)
 Frame = -2

Query: 467 FF*AFFHRRLSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNF 288
           FF A  H  L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++    
Sbjct: 100 FFWASSHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKE 159

Query: 287 SQTKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLL 108
            +    L  T+LL   FT  Q  EY +A FTI+D IYGSTFF+ATGFHG HVIIGTLFL+
Sbjct: 160 KRAVYALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLI 219

Query: 107 ICYIRHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LF 3
           IC IR    H +K HH GFEAAA Y HFVDVV LF
Sbjct: 220 ICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLF 254


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 230 LQAYEYIEASFTIADRIYGSTFFIATGFHG 141
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 230 LQAYEYIEASFTIADRIYGSTFFIATGFHG 141
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


>At2g06090.1 68415.m00668 self-incompatibility protein-related
           similar to S1 self-incompatibility protein [Papaver
           rhoeas] GI:452430
          Length = 135

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 251 LGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGI 138
           LG + T+ ++YEY   +F   D ++G T F  T  HG+
Sbjct: 53  LGIH-TVARSYEY---NFKFEDSVFGRTEFFCTLMHGV 86


>At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 225

 Score = 25.4 bits (53), Expect(2) = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 463 FELFSIEDYPQILKLEEYDP 404
           FEL S + YP+I  L+E DP
Sbjct: 116 FELKSHDKYPEIWALDEKDP 135



 Score = 21.0 bits (42), Expect(2) = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 430 ILKLEEYDPLQELHHLIHS 374
           IL +   DPLQ L ++ HS
Sbjct: 168 ILVVSHGDPLQMLQNVFHS 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,460,686
Number of Sequences: 28952
Number of extensions: 148887
Number of successful extensions: 265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)