Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c22r
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    46   0.001

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 22/24 (91%), Positives = 22/24 (91%)
 Frame = +3

Query: 594 FAHAARTHIDTLQSLQSRVYRLAV 665
           FAHAARTHIDTLQSLQSR  RLAV
Sbjct: 829 FAHAARTHIDTLQSLQSRFCRLAV 852



 Score = 33.1 bits (72), Expect = 7.2
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 675 DPTDPITLALDAFSSXT 725
           DP+DPITLALD FSS T
Sbjct: 922 DPSDPITLALDTFSSNT 938


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,224,120
Number of Sequences: 1657284
Number of extensions: 12135809
Number of successful extensions: 18747
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18746
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)