Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c22f
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   60   1e-09
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          31   0.83 
SB_19129| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_40482| Best HMM Match : S-antigen (HMM E-Value=1.4e-05)             31   1.1  
SB_41573| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=0.3)           30   1.4  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   30   1.4  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       30   1.9  
SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5)                   30   1.9  
SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_54773| Best HMM Match : Calx-beta (HMM E-Value=4.2e-33)             29   2.5  
SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)              28   7.7  

>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
 Frame = +1

Query: 361 STQAKSSIKLQ----NCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATA 528
           ST+ K++ ++Q    N V+TV+LGC+L L  I  + R +EYNP RF  V+M+I +PR TA
Sbjct: 270 STRMKTASEVQMWCRNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTA 329

Query: 529 LVF 537
           L+F
Sbjct: 330 LIF 332


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 24/57 (42%), Positives = 31/57 (54%)
 Frame = +1

Query: 238  TNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVAT 408
            T  +SQ V+G V L  + +S T Q      S T LTP  ++STQA SS+ L   V T
Sbjct: 1809 TTQASQPVSGGVQLASSAASST-QVTRSVASSTHLTPSVASSTQAASSVILSAEVTT 1864


>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +1

Query: 184 KTPIKAQNFSKE-DAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSA 360
           K P KA  FS+E +  +S   L   ++NG+     T +SFT         M++   +P A
Sbjct: 376 KIPTKADKFSREKNVSLSQLALYKVILNGEA----TTASFTRNCSPQDKIMSSRENVPRA 431

Query: 361 STQAKSSIKLQNCVATVSLGCELKLLDIYCRTR 459
            T    +  L+NCV   S   ++K+++ Y R R
Sbjct: 432 GTDDYRTRLLKNCVR--SYKRKIKMME-YSRLR 461


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = +1

Query: 190 PIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQ 369
           P+  +  S   +GVS ++++S +     + +PT+ S    P   H  +  L     +   
Sbjct: 137 PLLLKKSSSSSSGVSKSSVNSSMYQASSSSSPTSLSTLSSPETRHYHLPHLQRKQLSDAS 196

Query: 370 AKSSIKLQNCVATVSLGCEL 429
           + SS   + CV   ++G  +
Sbjct: 197 SSSSSSREGCVLQRTMGTSI 216


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
 Frame = +1

Query: 103 LNKMEVSQENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALT 282
           L  ++++Q +        SI E  S   TP+     SK++  V  ++ ++ V     + T
Sbjct: 582 LTTLKLNQPDSSPASTPASIPE--SANNTPLHPSLSSKQETNVPKSDNNTVVTTQAASFT 639

Query: 283 PTNSSF------TPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLD 441
           P   S       TP  ++P    +A+TP  +  +     + L +   T  LG    ++D
Sbjct: 640 PATPSASSADATTPSSMSPQQRTSAMTPNGTPVSMVGGKMSLGSTPRTAELGLGQDVVD 698


>SB_19129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 262 NGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCEL 429
           +G +A  PT   F P P+  H       P+P    + +    L+  V  VSLG  L
Sbjct: 688 SGSLARMPTTIRFDPDPIVAHRYRKQGRPVPVPGKRGEKVDALKGTVVEVSLGVVL 743


>SB_40482| Best HMM Match : S-antigen (HMM E-Value=1.4e-05)
          Length = 269

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/95 (30%), Positives = 38/95 (40%)
 Frame = +1

Query: 208 FSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIK 387
           F++ DA + GTN ++       AL  TNS+     L   NS TAL    S + Q  +S  
Sbjct: 20  FARNDASLQGTNSTALQGTNSTALQGTNST----ALQGTNS-TALQGTNSTALQGTNSTA 74

Query: 388 LQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQG 492
           LQ   +T   G     L     T     N    QG
Sbjct: 75  LQGTNSTALQGTNSTALQGTNSTALQGTNSTALQG 109


>SB_41573| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=0.3)
          Length = 173

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 292 SSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRY 462
           + F P+P+  H SM  +T     +  A    K Q+ ++ V LGCE +L D+    RY
Sbjct: 3   TGFKPRPVTIH-SMWCITRTELYTLHAVH--KQQSQLSAVDLGCEARLSDVIMFNRY 56


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 214 KEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQ 393
           KE+   +GT +   V  G+V  T T  S   QP++P +     +P+PS  T  ++ +   
Sbjct: 174 KENILEAGTAVGQAVKEGEVDFTDTTKSALLQPISPDSES---SPIPSPDTIPQAPVAAA 230

Query: 394 NCVATVSLG 420
             V    +G
Sbjct: 231 KTVYEPCMG 239


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 136 VEKEHEGSIS-EMYSTPKTPIKAQNFSKEDAGVSGTNLSSQV-VNGDVALTPTNSSFTPQ 309
           V +   GS    + S  KTP +  N  +     +GT  +S+  ++  +A     SSFTPQ
Sbjct: 289 VPRRRAGSAQGRLTSKKKTPPRRTNLLEAFTAAAGTPAASRSSISISLASPGMRSSFTPQ 348

Query: 310 PLNPHNSMT 336
              P +S++
Sbjct: 349 SFTPQSSIS 357


>SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5)
          Length = 582

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
 Frame = +1

Query: 154 GSISEMYS-TPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALTPTNSSFTPQPL-NPH 324
           GS+ E++S T  TP    ++  E A   G N LS   + G   ++  + +     L  P 
Sbjct: 107 GSVDELHSPTSDTP---SSYPAEGARGQGHNSLSGLGLTGTALVSSDSVNANRGTLPTPQ 163

Query: 325 NSMTALTPMPSASTQAKSSIKLQNCVATV-----SLGCELKLLDIYCRTRYSEYNPARFQ 489
              T+ TP+ S S      I   +C+AT+     ++G    + DI   + +SE    R+Q
Sbjct: 164 RQDTSDTPIRSGSCTPTVRIPQSDCMATIGNAYQTIGYSAAVTDILLAS-WSESTKKRYQ 222

Query: 490 G 492
           G
Sbjct: 223 G 223


>SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 271 VALTPTNSSFTPQPLNPHNSMTALTPMP 354
           +A++ TN+S+T  PLN H S + LT  P
Sbjct: 918 IAISSTNNSYT-SPLNSHTSQSRLTSPP 944


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +1

Query: 169  MYSTPKTPIKA-QNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALT 345
            +Y T   PI+A Q +     GV  TN    +   DV         TP    P N  T   
Sbjct: 1652 LYGT--APIRAGQVYQIIFEGVRSTNHKGDIAIDDVEFVVGTCPITPVNAKPTNPWTTPA 1709

Query: 346  PMPSAST 366
            P P+A+T
Sbjct: 1710 PSPTATT 1716


>SB_54773| Best HMM Match : Calx-beta (HMM E-Value=4.2e-33)
          Length = 667

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 241 NLSSQVVNGDVALT-PTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSL 417
           N+  +     VA T P  ++  P P NPH ++T     PS   + K    L++    +  
Sbjct: 530 NIDDEADRAPVATTAPATNANPPNPRNPHVAVTVQVKWPSLDKERKIPEDLESLGKMLVR 589

Query: 418 GCELKLL 438
           G   +LL
Sbjct: 590 GTYTRLL 596


>SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1133

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 397 CVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVFRW 543
           C  T SL C+L++LD  CR    E+  A  + + +++  PR++     W
Sbjct: 182 CNRTNSLCCKLEVLDFPCRQSALEHCIAMRESLRVRVAFPRSSNFSAIW 230


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +1

Query: 124 QENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFT 303
           +E   E E EGSI    ST   P+      +E+  + G   ++          PT    T
Sbjct: 377 EEKPEETEEEGSIYGNVSTTSKPLAPPEEKEEECSIYGNISTTSTPVAPPPTPPTRGGST 436

Query: 304 PQPL 315
            +PL
Sbjct: 437 KRPL 440


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 262 NGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSS 381
           +G V+  P     TPQ + P    T  TP P  ST   S+
Sbjct: 560 DGVVSAKPPTKKTTPQSMIPPGKPTDQTPKPPGSTSPNSA 599


>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
          Length = 774

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 280 TPTN-SSFTPQPLNPHNSMTALTPMPSAST 366
           TPT+ S+ TP P N +N  +  TP+ S++T
Sbjct: 73  TPTSISNVTPTPTNINNISSTTTPLDSSAT 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,546
Number of Sequences: 59808
Number of extensions: 329195
Number of successful extensions: 866
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)