Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c22f
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13445.1 68416.m01691 transcription initiation factor IID-1 (...    58   5e-09
At1g55520.2 68414.m06352 transcription initiation factor IID-2 (...    58   5e-09
At1g55520.1 68414.m06351 transcription initiation factor IID-2 (...    58   5e-09
At3g29760.1 68416.m03758 NLI interacting factor (NIF) family pro...    30   1.6  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    29   2.7  
At2g27820.1 68415.m03373 prephenate dehydratase family protein         29   2.7  
At5g56440.1 68418.m07045 F-box family protein contains F-box dom...    28   4.8  
At5g44450.1 68418.m05447 expressed protein contains Pfam profile...    28   4.8  
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans...    28   4.8  
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar...    28   4.8  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    28   6.3  

>At3g13445.1 68416.m01691 transcription initiation factor IID-1
           (TFIID-1) / TATA-box factor 1 / TATA sequence-binding
           protein 1 (TBP1) identical to Swiss-Prot:P28147
           transcription initiation factor TFIID-1 (TATA-box factor
           1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis
           thaliana]
          Length = 200

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +1

Query: 388 LQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVF 537
           LQN V+TV+L C+L L  I  + R +EYNP RF  V+M+I +P+ TAL+F
Sbjct: 25  LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIF 74



 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 385 KLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVF 537
           K+QN V +  +   ++L  + Y    +S Y P  F G++ ++  P+   L+F
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIF 165


>At1g55520.2 68414.m06352 transcription initiation factor IID-2
           (TFIID-2) / TATA-box factor 2 / TATA sequence-binding
           protein 2 (TBP2) identical to
           Swiss-Prot:P28148|TF22_ARATH Transcription initiation
           factor TFIID-2 (TATA-box factor 2) (TATA
           sequence-binding protein 2) (TBP-2) [Arabidopsis
           thaliana]
          Length = 200

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +1

Query: 388 LQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVF 537
           LQN V+TV+L C+L L  I  + R +EYNP RF  V+M+I +P+ TAL+F
Sbjct: 25  LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIF 74



 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 385 KLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVF 537
           K+QN V +  +   ++L  + Y  + +S Y P  F G++ ++  P+   L+F
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIF 165


>At1g55520.1 68414.m06351 transcription initiation factor IID-2
           (TFIID-2) / TATA-box factor 2 / TATA sequence-binding
           protein 2 (TBP2) identical to
           Swiss-Prot:P28148|TF22_ARATH Transcription initiation
           factor TFIID-2 (TATA-box factor 2) (TATA
           sequence-binding protein 2) (TBP-2) [Arabidopsis
           thaliana]
          Length = 200

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +1

Query: 388 LQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVF 537
           LQN V+TV+L C+L L  I  + R +EYNP RF  V+M+I +P+ TAL+F
Sbjct: 25  LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIF 74



 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 385 KLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVF 537
           K+QN V +  +   ++L  + Y  + +S Y P  F G++ ++  P+   L+F
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIF 165


>At3g29760.1 68416.m03758 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 465

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 109 KMEVSQENRVEKEHEGS-ISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTP 285
           K  VS +  VEK+ EGS IS + S+ + P+   N   +   VSG     +   G V L  
Sbjct: 79  KHVVSGDENVEKKEEGSVISAVTSSDEVPVVKNN---DSCVVSGDETVEKNEEGCVILAV 135

Query: 286 TNSSFTP 306
           T+S   P
Sbjct: 136 TSSDEVP 142


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
           transcription factor (HUA2) - Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1445

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = +1

Query: 157 SISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQP---LNPHN 327
           +I  +  +PK   +  +F K+  G + T   +     D    P+NSS+  +P   L P N
Sbjct: 548 NIKPILRSPKNSYQLVSFKKQVTGQNKTAKVAGAGMPDSVEGPSNSSYMGKPVIKLPPQN 607

Query: 328 -SMTALTPMPSAST-QAKSSIKLQNCVATVS 414
              T  +P  S      K  + +QN +A VS
Sbjct: 608 VKQTLRSPKKSPQLFSTKELVAVQNKIAKVS 638


>At2g27820.1 68415.m03373 prephenate dehydratase family protein
          Length = 424

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +1

Query: 118 VSQENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDV-ALTPTN- 291
           +S +   +++ E   S    +    + A N     AGVS  NL     N  + +  P + 
Sbjct: 49  LSSKVNSQEQSESLSSNSNGSSSYHVSAVNGHNNGAGVSDLNLVPFNNNQSIQSKKPLSI 108

Query: 292 SSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVA 405
           S  +P P++  N   A   +P A ++A +     NC A
Sbjct: 109 SDLSPAPMHGSNLRVAYQGVPGAYSEAAAGKAYPNCQA 146


>At5g56440.1 68418.m07045 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 430

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 250 SQVVNGDVALT---PTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLG 420
           SQV   DV      P+  S T    +PH+   +L  MP      K+SIK+++  + + +G
Sbjct: 211 SQVPGDDVGFVIKAPSLKSLTLLNFSPHSGFRSLVKMPDL---VKASIKVRHGDSKMFMG 267

Query: 421 C 423
           C
Sbjct: 268 C 268


>At5g44450.1 68418.m05447 expressed protein contains Pfam profile
           PF05891: Eukaryotic protein of unknown function (DUF858)
          Length = 276

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 192 WCFWC*IHFTDRTFMFFFN 136
           W  WC  H TD  F+ FFN
Sbjct: 163 WVQWCIGHLTDNDFVSFFN 181


>At2g13150.1 68415.m01450 expressed protein contains a bZIP
           transcription factor basic domain signature (PDOC00036)
          Length = 262

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 259 VNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATV 411
           +NG    TP+      QP    +S+  L+P PS+S   ++SI L N  A+V
Sbjct: 1   MNGSDNSTPSRPRSITQPSLAFSSLPPLSPSPSSS--RRNSIPLMNPSASV 49


>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
           gb|U06698 neuronal kinesin heavy chain from Homo sapiens
           and contains a PF|00225 Kinesin motor domain. EST
           gb|AA042507 comes from this gene; identical to cDNA
           MKRP1 mRNA for kinesin-related protein,  GI:16902291,
           kinesin-related protein [Arabidopsis thaliana]
           GI:16902292
          Length = 890

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 280 TPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSS 381
           TP++S F+  P+   + +   +P PS S+ A SS
Sbjct: 31  TPSSSHFSASPVTSSSPLLRSSPSPSTSSAAASS 64


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 283 PTNSSFTPQPLNPHNSMTALTPMPS 357
           PTNS+ +P P +  NS T+  P PS
Sbjct: 10  PTNSTSSPSPPSNTNSTTSSPPAPS 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,451,816
Number of Sequences: 28952
Number of extensions: 235946
Number of successful extensions: 639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)