Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c18r
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    29   4.8  
08_02_0035 + 11453171-11455186                                         28   8.4  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.4  

>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 174 YTVPWGFNGFINYIK 218
           Y VPWG  G +NYIK
Sbjct: 377 YIVPWGMYGCVNYIK 391


>08_02_0035 + 11453171-11455186
          Length = 671

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 610 KGAPKTLCKVDPLPATTIPVRVFRL 684
           K A   LC+ DPLP  T  + +FR+
Sbjct: 104 KNATAFLCRTDPLPPATADLLMFRI 128


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -2

Query: 668 TGMVVAGSGSTLHRVFGAPFHSCILHLFPARFHISPDRCSLVAAAAPHLET*ICIFLLKT 489
           +G++V      L+R  G P    ++   P R  +  +R  L+ AAA H +  +  FLL+T
Sbjct: 261 SGLLVCCDNFVLYRNQGHPEVRAVI---PRRADLPAERGVLIVAAATHRQKSLFFFLLQT 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,597
Number of Sequences: 37544
Number of extensions: 360587
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)