Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c18r
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)                      29   3.7  
SB_31145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
          Length = 927

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 612 LPLLYITFVPCSFSHISRPVQPCCCGCSASRD 517
           +P+L++  +PC   ++S     CCC C   RD
Sbjct: 411 VPILFLISLPCLLVNMS-----CCCSCKPKRD 437


>SB_31145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 209 IYETVEPPGYSVPVS--CGVKVKPGFEKYYVLSSFQCSSGCMYPNYTVVSLY*NVIISLS 36
           IY ++E PG +VP S  C V     F     L +++C       + T V  + ++++S+S
Sbjct: 10  IYASMETPGVAVPQSRICDVSTHDAFLLGQSLETYECKPN----DVTAVQCFVSILLSIS 65


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 570 HISRPVQPCCCGC 532
           H+  PV PCCC C
Sbjct: 77  HVELPVSPCCCLC 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,259,183
Number of Sequences: 59808
Number of extensions: 423084
Number of successful extensions: 953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)