Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c18f
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   8.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 271 HLRSGRGCPDCWCPPGASQLPPLQRV 348
           HLR GRG    + P  ++ +P  + V
Sbjct: 192 HLRKGRGAIGAYGPEKSASIPKKKEV 217


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 62  GVFTGPKNCDDY 27
           G+F+ PKNC  Y
Sbjct: 564 GIFSDPKNCAAY 575


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 401 NRQPDQRILQPNQHPSG*TLCKGGSWLAP 315
           N  PD   ++P    S  TLC G   ++P
Sbjct: 285 NGSPDVIKVEPELSDSEKTLCNGSKGISP 313


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +2

Query: 74  NKMAENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVV 253
           + +   NPI+   +        I  SA    Y   K    +   SV     I  S+ PV+
Sbjct: 115 SSVGSRNPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSV-PVL 173

Query: 254 MAGIIAIYGL 283
           ++G+IA+ G+
Sbjct: 174 LSGLIAMCGM 183


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +2

Query: 74  NKMAENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVV 253
           + +   NPI+   +        I  SA    Y   K    +   SV     I  S+ PV+
Sbjct: 348 SSVGSRNPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSV-PVL 406

Query: 254 MAGIIAIYGL 283
           ++G+IA+ G+
Sbjct: 407 LSGLIAMCGM 416


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +2

Query: 74  NKMAENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVV 253
           + +   NPI+   +        I  SA    Y   K    +   SV     I  S+ PV+
Sbjct: 348 SSVGSRNPIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSV-PVL 406

Query: 254 MAGIIAIYGL 283
           ++G+IA+ G+
Sbjct: 407 LSGLIAMCGM 416


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 245 PVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 340
           P+V   I+   G V   ++AG L  P   P +
Sbjct: 80  PIVKYIILIDLGEVAVTVLAGILTTPFKLPYF 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,619
Number of Sequences: 336
Number of extensions: 3960
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)