Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c15r
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.47 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   2.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 479 YLHTKYYCA*VIYLWCILFFVCL 547
           Y+H  + CA +I+   +LF +C+
Sbjct: 263 YMHLLFCCAFIIFTMHLLFLLCI 285



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 494 YYCA*VIYLWCILFFVCL 547
           +YCA +I+   +LF +C+
Sbjct: 149 FYCAFIIFTVHLLFLLCI 166


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 548 INKRKKECTKDKLLTRNNISCVNKLL 471
           + + K EC + +L   +N+ CVN+++
Sbjct: 372 LTQLKDECPEVRLNIISNLDCVNEVI 397


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,604
Number of Sequences: 336
Number of extensions: 3117
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)