Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c15r
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.6  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   6.2  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   8.2  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 98  KYLNCFQFLILKFYVFDIKTVQFCTGTY 181
           KYL  F +LIL ++  DI  +Q  + T+
Sbjct: 340 KYLGPFSYLILYYFFLDISKLQMTSLTF 367


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 614 LVHRKLLNIFNYDDFLWNLCRSINKRKK 531
           +  R ++ I NYD F WN+ + ++  +K
Sbjct: 23  VAERPIVMIDNYDSFTWNVVQYLSNLEK 50


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = +2

Query: 512 IYLW---CILFFVCLLNDIN 562
           IYLW   C+ FF+ LL+D+N
Sbjct: 869 IYLWQNKCLDFFLSLLSDLN 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,156
Number of Sequences: 5004
Number of extensions: 50794
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)