Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c15r
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 28   8.8  

>SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 593 NIFNYDDFLWNLCRSINKRKKECTKDKLLTRNNI 492
           ++ NY D +  +  SI KR+ EC K+  L   +I
Sbjct: 163 DLVNYPDRIDEILDSIKKRRDECVKELALLEKDI 196


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 407 VVRIINML*NSSMQKCNNNVTLKVYLHTKYYCA*VIYLWCILFFVCLLNDINSRENHHN* 586
           VV+    L   +  + N  +  K +L   + C  ++Y   I +F+ ++N  +   N  N 
Sbjct: 434 VVQFNTQLRQDAFIRLNGRLMAKYWLKITHVCLKIVYSRSIYYFI-VINTYSQSNNVLNR 492

Query: 587 R--YLKVFYELRH 619
           R   LK FY  R+
Sbjct: 493 RKIVLKAFYSWRN 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,559,270
Number of Sequences: 59808
Number of extensions: 326729
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)