Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c15f
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.46 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 467 TSSPLAARGAEIQSSIKPSSRLTLSGTAIAS 559
           + + L   GA++ + +   +RLTLSG AIAS
Sbjct: 391 SDNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 200 TLSATPAVSQSMEPSSTSTTTVS 268
           +L  T   S + EPS+T++TT+S
Sbjct: 377 SLVPTTTASPTTEPSTTTSTTIS 399


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 215 PAVSQSMEPSSTSTTTVSIACPASPNITARGAMDAATPSL 334
           PA + +   ++T+TTT +     +PN T   +     P +
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQV 693



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 194 PSTLSATPAVSQSMEPSSTSTTTV 265
           P+T SA  A S +    +T TTT+
Sbjct: 238 PATPSAVVATSNATAAMTTGTTTI 261



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 59   HESKKI*KQSPAQSCQQRLKPPP 127
            H S+K  +Q P Q  QQ+ +  P
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQP 1517


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 PCDPSSWRIVARSPLRLR 389
           PCDP   R+ + +PL LR
Sbjct: 60  PCDPVGRRLKSLAPLVLR 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 480 SGELVCIAIGAIGTAS 433
           +GE VC A  A GTAS
Sbjct: 653 AGEYVCTAENAAGTAS 668


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 PCDPSSWRIVARSPLRLR 389
           PCDP   R+ + +PL LR
Sbjct: 60  PCDPVGRRLKSLAPLVLR 77


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 387 RWMQEGAWRW 416
           RW+Q+GA+ W
Sbjct: 171 RWVQQGAFGW 180


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 48  TQHNTKVKKYKNNHRHNHVN 107
           T HN    KY  N+++N+ N
Sbjct: 89  TIHNNNNYKYNYNNKYNYNN 108


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 618 LVFHHGECRIGHWIPALHAREAIAVPLSVKRDDG 517
           +V+  GE  +   +PA+ +R  I +   +KR+ G
Sbjct: 365 VVYRPGENPVTQRLPAVLSRIGIILASPLKREGG 398


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 359 TPRAWITRSVMGSPH 315
           TP  W+ R+V+   H
Sbjct: 179 TPHGWMRRNVLNKQH 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,071
Number of Sequences: 438
Number of extensions: 3796
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)