Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c12f
(604 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 27 0.16
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 27 0.16
Z69735-1|CAA93623.1| 162|Tribolium castaneum initiation factor ... 23 2.6
L01616-1|AAA30096.1| 74|Tribolium castaneum zinc finger protei... 22 4.6
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein ... 22 4.6
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 21 8.0
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 21 8.0
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 26.6 bits (56), Expect = 0.16
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 604 RKSDSGCGNDGSRDDHWLGSNGS 536
R ++G GNDG++ D LGS GS
Sbjct: 640 RYMEAGDGNDGNQSDDNLGSCGS 662
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 26.6 bits (56), Expect = 0.16
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 604 RKSDSGCGNDGSRDDHWLGSNGS 536
R ++G GNDG++ D LGS GS
Sbjct: 532 RYMEAGDGNDGNQSDDNLGSCGS 554
>Z69735-1|CAA93623.1| 162|Tribolium castaneum initiation factor
5-like protein protein.
Length = 162
Score = 22.6 bits (46), Expect = 2.6
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 445 GLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 341
G R +GD G S VD QN+ E S N
Sbjct: 74 GKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNEN 108
>L01616-1|AAA30096.1| 74|Tribolium castaneum zinc finger protein
protein.
Length = 74
Score = 21.8 bits (44), Expect = 4.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +1
Query: 178 YRCRTCHHR*VRAHFRRT 231
+ C+ CH R R H +T
Sbjct: 10 FECQECHKRFTRDHHLKT 27
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 304 NGDRYELVDDGRPNGDRFEFVDNG 233
+G++ +LV + GD +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 304 NGDRYELVDDGRPNGDRFEFVDNG 233
+G++ +LV + GD +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 304 NGDRYELVDDGRPNGDRFEFVDNG 233
+G++ +LV + GD +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 304 NGDRYELVDDGRPNGDRFEFVDNG 233
+G++ +LV + GD +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 304 NGDRYELVDDGRPNGDRFEFVDNG 233
+G++ +LV + GD +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175
>AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein
protein.
Length = 370
Score = 21.8 bits (44), Expect = 4.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +1
Query: 178 YRCRTCHHR*VRAHFRRT 231
+ C+ CH R R H +T
Sbjct: 163 FECQECHKRFTRDHHLKT 180
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 21.0 bits (42), Expect = 8.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 159 MGAGPATPGLTRPY*GPG 106
MG GP+ L P GPG
Sbjct: 378 MGMGPSLTPLASPGCGPG 395
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 21.0 bits (42), Expect = 8.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 159 MGAGPATPGLTRPY*GPG 106
MG GP+ L P GPG
Sbjct: 378 MGMGPSLTPLASPGCGPG 395
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,473
Number of Sequences: 336
Number of extensions: 2061
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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