Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c12f
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 29 0.40
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 0.91
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.1
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 2.1
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 2.8
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 3.7
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 3.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.9
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 4.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.9
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 4.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 8.5
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca... 25 8.5
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 8.5
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 8.5
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 8.5
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 394 ASLVDVQNDLHERSAVSNGGKRRVVYDSGSN-GDRYELVDDGRPNGDRFE 248
A+ D+QN S+ G V Y SG+ GDR +DDG + FE
Sbjct: 90 AAYKDIQNTQKSLVTQSSTGSANVAYISGNGPGDR-SFIDDGNYSASSFE 138
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 306 PTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATP 136
P+ +G+N + P GSN T A + + +S +G +SM P TP
Sbjct: 140 PSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLTP 196
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -2
Query: 366 CTRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGP 187
CT TG LST PT T++S+ + P S S T + + + S+
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 288
Query: 186 TAI-GTKSSMMGAGPATP 136
T+I T +S P P
Sbjct: 289 TSIPPTGNSTTPVTPTVP 306
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -2
Query: 348 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTE---MGSNSSMMAGPTAI 178
S+T LST + P+ ++SST + + S+S + + + S+SS + PT+
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTST 286
Query: 177 GTKSSMMGAGPATPGLT 127
+ S + ++P T
Sbjct: 287 SSTISSSSSSSSSPTST 303
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 321 STIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA 142
S+ + PT + SST++ + S+ + + M S+SS + PT+ + S + P+
Sbjct: 295 SSSSSPT---STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351
Query: 141 T 139
+
Sbjct: 352 S 352
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.1 bits (57), Expect = 2.1
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = -1
Query: 547 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQND 368
S+ SN S + + DGA+ +G+ +DF V+ + +N D +G+N V ++ D
Sbjct: 342 SHSSNAS--ENIVDGAVTQANGIESDFTRVDHEPIIVNN--DDENGNNESENEEV-IEED 396
Query: 367 LHERSAVSNGGKRRVVYDSGSN 302
R+ ++ + +VV D N
Sbjct: 397 NLNRNVIAE-AQNQVVADEERN 417
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 348 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPT--EMGSNSSMMAGPTAIG 175
S++ A L++ + TNS+T A PT S+SLT + T + S+S+ + +
Sbjct: 77 SSSAASSSLTSSSSLASSSTNSTTSASPT---SSSLTSSSATSSSLASSSTTSSSLASSS 133
Query: 174 TKSSMMGAGPAT 139
SS + + T
Sbjct: 134 ITSSSLASSSIT 145
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 236 IVNEFEPISVGPA--IVDEFVPISVGPAI--VDNPPLAPVADSTPLVQIILNINQASSAP 403
+V E + PA +V E + PA+ V P P + P+V + ++ Q + P
Sbjct: 627 VVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Query: 404 IVPGPG 421
+VP G
Sbjct: 687 VVPEAG 692
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +2
Query: 182 AVGPAIIDEFEPISVGPAIVNEFEPISVGPA--IVDEFVPISVGPA--IVDNPPLAPVAD 349
A P++I P +V E + PA + E PA +V P P
Sbjct: 504 AAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRP 563
Query: 350 STPLVQIILNINQASSAPIVP 412
+ P+V L++ Q AP+ P
Sbjct: 564 AVPVVPEALSVPQPPVAPVAP 584
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 317 VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 418
V PP+APVA P V + AP VP P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 290 VPISVGPAIVDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 418
VP+ V PP+APVA P V AP VP P
Sbjct: 565 VPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQP 607
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +2
Query: 191 PAIIDEFEPISVGPAIVNEFEPISVGPAIVDE-FVPISVGPAIVDNPPLAPVADSTPLVQ 367
PA+ F + A +P + P++ P+ V PP APVA P
Sbjct: 486 PAMPKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVP--- 542
Query: 368 IILNINQASSAPIVP 412
+ Q +AP+VP
Sbjct: 543 ---SAPQRPAAPVVP 554
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +2
Query: 290 VPISVGPAIVDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 418
VP+ V PP APV P V + AP VP P
Sbjct: 625 VPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 269 PAIVDEFVPISVGPAIVDNPPLAPVADSTPLVQIILNINQASSAPI 406
PAI DE + +DNP + + L++ +++INQAS + +
Sbjct: 178 PAIFDELQRSLSEVSNMDNPSFSKGLHTLHLLECLVDINQASGSDL 223
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 3.7
Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
Frame = -1
Query: 442 LRDNGIDTGSGDNRGRASLVDV--QNDLHERSAVSNGGKRRVVYDS--GSNGDRYELVDD 275
L++ G D + + +L+D+ Q + + GK + +S SN D ++
Sbjct: 31 LKETG-DKDLAKGKVKKNLLDLLSQKEFLPYLTTEDVGKHKKTKESLEKSNDDSQKISKK 89
Query: 274 GRPNGDRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALLRAGTHQA 95
G P + + G+G S S+ +D S ++ ++ + +
Sbjct: 90 GAPPEKAHS---SSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDS 146
Query: 94 LSRAGDSNGHHGSEGQEEFHSFSSS 20
S + DS SEG + S SSS
Sbjct: 147 SSSSSDSESESSSEGSDSSSSSSSS 171
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/77 (23%), Positives = 29/77 (37%)
Frame = -2
Query: 363 TRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPT 184
T ++TG+ G G T +S+ + GS + P +GS ++ T
Sbjct: 162 TTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTT 221
Query: 183 AIGTKSSMMGAGPATPG 133
A S A + PG
Sbjct: 222 ANSGFSFGKPATTSAPG 238
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 541 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRD 434
GSNV +++ GD + D N ++++ + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 185 VGPAIIDEFEPISVGPAIVNEF--EPISVGPAIVDEFVPISVGPAIVDNPPLAPVADSTP 358
V P I+ EF P ++ E I+ +D + P I NP +A TP
Sbjct: 247 VCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTP 306
Query: 359 LVQIILNINQASSAPIVPG 415
L +++ N+ Q+S + G
Sbjct: 307 LPELVDNVVQSSPIDVRKG 325
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 379 VQNDLHERSAVSNGGKRRVVYDSGSN 302
+ N+L RS+ +GGK R+ DS +
Sbjct: 3 LSNELFHRSSKDHGGKSRICLDSSED 28
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 604 RKSDSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 428
R ++ CG R + GSN S N+SN+ DN++ ND N+N+ N
Sbjct: 493 RHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNT 550
Query: 427 ID 422
D
Sbjct: 551 DD 552
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 604 RKSDSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 428
R ++ CG R + GSN S N+SN+ DN++ ND N+N+ N
Sbjct: 493 RHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNT 550
Query: 427 ID 422
D
Sbjct: 551 DD 552
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 337 GKRRVVYDS--GSNGDRYELVDDGRPNGDRFEFVDNGRSDGNGL 212
GKR VV S G+NG Y V G P G F+ + G +G+
Sbjct: 413 GKRNVVIVSSAGNNGPAYTTV--GAPGGTTFDVISVGAYVTSGM 454
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -1
Query: 598 SDSGCGNDGSRDDHWLGSNGSNVSNLDR--LGDGAIDNNHGLSNDFGFVNDNHGLRDNGI 425
S++ N + ++ + S S++S + LG +NN+ SN + N+N G +
Sbjct: 527 SNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQH 586
Query: 424 DTGSGDNRGRAS 389
S +G AS
Sbjct: 587 QQSSSSLQGLAS 598
>SPBC336.13c |||mitochondrial inner membrane peptidase complex
catalytic subunit 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 136 GTHQALLRAGTHQALSRAGDSNGHHGSEGQEEFHSFSSS 20
G +++ + LS GH EG E+FHS S+
Sbjct: 96 GVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSIDSN 134
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 211 ELIYDGRSDSDRYKVVDDGSR 149
EL+Y D DR+ V+D G R
Sbjct: 262 ELVYPKLLDDDRFYVLDSGER 282
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 505 GAIDNNHGLSNDFGFVNDNHGL 440
G ID N +S FGF+ N GL
Sbjct: 287 GIIDRNILVSRGFGFLKSNSGL 308
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 457 NDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 341
ND D D GS + RASL QN +S N
Sbjct: 18 NDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALN 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,973
Number of Sequences: 5004
Number of extensions: 34094
Number of successful extensions: 147
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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