Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c11r
(717 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB6B51 Cluster: PREDICTED: similar to mitochondr... 337 2e-91
UniRef50_Q9VXQ0 Cluster: CG8288-PA; n=7; Neoptera|Rep: CG8288-PA... 332 4e-90
UniRef50_UPI00015B6099 Cluster: PREDICTED: similar to Mitochondr... 326 3e-88
UniRef50_Q5DGM0 Cluster: SJCHGC01793 protein; n=2; Schistosoma j... 190 3e-47
UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;... 188 1e-46
UniRef50_A7SQV4 Cluster: Predicted protein; n=1; Nematostella ve... 174 2e-42
UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal pr... 162 9e-39
UniRef50_Q5KGQ8 Cluster: Ribosomal large subunit assembly and ma... 151 2e-35
UniRef50_UPI0000E48888 Cluster: PREDICTED: similar to mitochondr... 144 3e-33
UniRef50_A0D1W5 Cluster: Chromosome undetermined scaffold_34, wh... 134 2e-30
UniRef50_Q9LRN8 Cluster: 50S ribosomal protein L3-2, chloroplast... 130 3e-29
UniRef50_P31334 Cluster: 54S ribosomal protein L9, mitochondrial... 128 1e-28
UniRef50_Q0CHL1 Cluster: 60S ribosomal protein L9, mitochondrial... 126 5e-28
UniRef50_Q54I61 Cluster: Putative uncharacterized protein; n=1; ... 124 2e-27
UniRef50_A5CCL2 Cluster: 50S ribosomal protein L3; n=1; Orientia... 124 2e-27
UniRef50_Q00RY2 Cluster: Putative ribosomal protein L3; n=1; Ost... 122 1e-26
UniRef50_Q9P6P6 Cluster: Mitochondrial ribosomal protein subunit... 121 2e-26
UniRef50_Q6C279 Cluster: Yarrowia lipolytica chromosome F of str... 118 1e-25
UniRef50_Q22HG3 Cluster: Ribosomal protein L3 containing protein... 113 5e-24
UniRef50_Q2JFH6 Cluster: 50S ribosomal protein L3; n=53; Bacteri... 113 5e-24
UniRef50_Q1AU29 Cluster: 50S ribosomal protein L3; n=1; Rubrobac... 110 3e-23
UniRef50_Q28UW2 Cluster: 50S ribosomal protein L3; n=93; Proteob... 107 2e-22
UniRef50_P60454 Cluster: 50S ribosomal protein L3; n=14; Bacteri... 107 2e-22
UniRef50_Q873B3 Cluster: Related to ribosomal protein L3, mitoch... 107 3e-22
UniRef50_Q9SKX4 Cluster: 50S ribosomal protein L3-1, chloroplast... 107 3e-22
UniRef50_Q9L0E0 Cluster: 50S ribosomal protein L3; n=35; Bacteri... 106 5e-22
UniRef50_Q5AAK4 Cluster: Likely mitochondrial ribosomal protein;... 103 3e-21
UniRef50_Q6UCS0 Cluster: 50S ribosomal protein L3; n=1; uncultur... 103 6e-21
UniRef50_Q08TH3 Cluster: 50S ribosomal protein L3; n=2; Cystobac... 102 8e-21
UniRef50_A4RTL3 Cluster: Plastid ribosomal protein L3, imported ... 102 8e-21
UniRef50_Q67JU3 Cluster: 50S ribosomal protein L3; n=55; Firmicu... 102 8e-21
UniRef50_Q8XHS3 Cluster: 50S ribosomal protein L3; n=7; Bacteria... 100 4e-20
UniRef50_Q3A9R6 Cluster: 50S ribosomal protein L3; n=3; Bacteria... 99 9e-20
UniRef50_A3EVS1 Cluster: 50S ribosomal protein L3; n=1; Leptospi... 98 2e-19
UniRef50_Q9HWD5 Cluster: 50S ribosomal protein L3; n=19; Proteob... 97 4e-19
UniRef50_Q580R4 Cluster: Ribosomal protein L3 mitochondrial, put... 96 7e-19
UniRef50_Q3YRK9 Cluster: 50S ribosomal protein L3; n=3; Anaplasm... 96 7e-19
UniRef50_Q6MJ15 Cluster: 50S ribosomal protein L3; n=1; Bdellovi... 96 9e-19
UniRef50_A6PR85 Cluster: 50S ribosomal protein L3; n=2; Chlamydi... 95 1e-18
UniRef50_Q97EH8 Cluster: 50S ribosomal protein L3; n=12; Bacteri... 95 2e-18
UniRef50_O66431 Cluster: 50S ribosomal protein L3; n=9; Bacteria... 94 4e-18
UniRef50_Q3ZZM4 Cluster: 50S ribosomal protein L3; n=10; cellula... 92 1e-17
UniRef50_A7APA8 Cluster: 50S ribosomal protein L3, putative; n=3... 92 1e-17
UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32; Bacteri... 92 1e-17
UniRef50_P60447 Cluster: 50S ribosomal protein L3; n=85; Gammapr... 91 2e-17
UniRef50_P94267 Cluster: 50S ribosomal protein L3; n=4; Borrelia... 91 2e-17
UniRef50_Q5GSU4 Cluster: 50S ribosomal protein L3; n=6; Ricketts... 91 3e-17
UniRef50_Q7XYP4 Cluster: 50S ribosomal protein L3, chloroplast p... 91 3e-17
UniRef50_Q7V9W2 Cluster: 50S ribosomal protein L3; n=35; cellula... 90 6e-17
UniRef50_Q7WRC5 Cluster: 50S ribosomal protein L3; n=112; Bacter... 90 6e-17
UniRef50_Q6Q8Y8 Cluster: 50S ribosomal protein L3; n=1; uncultur... 89 1e-16
UniRef50_Q85FW3 Cluster: Chloroplast 50S ribosomal protein L3; n... 89 1e-16
UniRef50_Q7VQE8 Cluster: 50S ribosomal protein L3; n=38; Bacteri... 88 2e-16
UniRef50_Q1NYY1 Cluster: 50S ribosomal protein L3; n=4; Bacteria... 87 3e-16
UniRef50_A6CGN0 Cluster: 50S ribosomal protein L3; n=2; Bacteria... 87 4e-16
UniRef50_Q5P332 Cluster: 50S ribosomal protein L3; n=9; Bacteria... 87 5e-16
UniRef50_Q9Z7Q7 Cluster: 50S ribosomal protein L3; n=9; Chlamydi... 85 1e-15
UniRef50_P75580 Cluster: 50S ribosomal protein L3; n=4; Mycoplas... 85 2e-15
UniRef50_Q8EUB3 Cluster: 50S ribosomal protein L3; n=6; Firmicut... 83 9e-15
UniRef50_A6G3Z5 Cluster: 50S ribosomal protein L3; n=1; Plesiocy... 81 2e-14
UniRef50_O83219 Cluster: 50S ribosomal protein L3; n=2; Treponem... 81 2e-14
UniRef50_Q7UN20 Cluster: 50S ribosomal protein L3; n=2; Planctom... 81 2e-14
UniRef50_Q81VT0 Cluster: 50S ribosomal protein L3; n=9; Bacteria... 81 3e-14
UniRef50_A6GV22 Cluster: 50S ribosomal protein L3; n=2; cellular... 80 5e-14
UniRef50_A5K6P7 Cluster: 50S ribosomal protein L3, putative; n=5... 79 8e-14
UniRef50_Q8KTP2 Cluster: 50S ribosomal protein L3; n=1; Candidat... 78 2e-13
UniRef50_Q4UBR8 Cluster: 50S ribosomal protein L3, putative; n=2... 78 2e-13
UniRef50_Q8Y440 Cluster: 50S ribosomal protein L3; n=19; Bacteri... 78 2e-13
UniRef50_Q5FM90 Cluster: 50S ribosomal protein L3; n=31; Bacteri... 77 6e-13
UniRef50_Q2IJD0 Cluster: 50S ribosomal protein L3; n=2; Anaeromy... 75 1e-12
UniRef50_Q1ISC2 Cluster: 50S ribosomal protein L3; n=5; Bacteria... 72 1e-11
UniRef50_Q9TLT2 Cluster: Chloroplast 50S ribosomal protein L3; n... 72 2e-11
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 71 2e-11
UniRef50_A7AWX6 Cluster: Ribosomal protein L3 domain containing ... 70 5e-11
UniRef50_Q7M8D4 Cluster: 50S ribosomal protein L3; n=23; Epsilon... 70 7e-11
UniRef50_Q8I4X7 Cluster: 50S ribosomal protein L3, putative; n=7... 61 2e-08
UniRef50_A5KRQ1 Cluster: 50S ribosomal protein L3; n=1; candidat... 61 3e-08
UniRef50_A6QCP8 Cluster: 50S ribosomal protein L3; n=2; Epsilonp... 59 9e-08
UniRef50_Q9AIN8 Cluster: 50S ribosomal protein L3; n=4; Candidat... 57 5e-07
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 56 9e-07
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 54 4e-06
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 52 1e-05
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 52 2e-05
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 50 4e-05
UniRef50_P53307 Cluster: Uncharacterized protein YGR219W; n=1; S... 49 1e-04
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 44 0.004
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 44 0.005
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 43 0.009
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 42 0.015
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 42 0.020
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 41 0.027
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 40 0.061
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 40 0.081
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 38 0.19
UniRef50_A3XPQ6 Cluster: Putative outer membrane protein, probab... 36 1.3
UniRef50_Q5AG30 Cluster: Putative uncharacterized protein; n=3; ... 36 1.3
UniRef50_A5DTI2 Cluster: Predicted protein; n=1; Lodderomyces el... 36 1.3
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 36 1.3
UniRef50_Q4DGU3 Cluster: Helicase-like protein, putative; n=1; T... 35 2.3
UniRef50_A5WWD4 Cluster: Novel collagen protein; n=5; Danio reri... 34 3.0
UniRef50_A4A686 Cluster: Putative uncharacterized protein; n=1; ... 34 3.0
UniRef50_A2FG46 Cluster: Putative uncharacterized protein; n=2; ... 34 3.0
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 34 4.0
UniRef50_A1XVT1 Cluster: Fibrillar collagen precursor; n=1; Hydr... 34 4.0
UniRef50_UPI0000E46F0A Cluster: PREDICTED: similar to G/T mismat... 33 5.3
UniRef50_A7TEL2 Cluster: Putative uncharacterized protein; n=1; ... 33 5.3
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 33 5.3
UniRef50_Q1DYA1 Cluster: Putative uncharacterized protein; n=1; ... 33 7.0
UniRef50_Q4RQM9 Cluster: Chromosome 2 SCAF15004, whole genome sh... 33 9.3
UniRef50_Q2LSF4 Cluster: Seceted metal-dependent hydrolase of th... 33 9.3
UniRef50_Q4DY12 Cluster: Putative uncharacterized protein; n=1; ... 33 9.3
UniRef50_Q28XA1 Cluster: GA12387-PA; n=1; Drosophila pseudoobscu... 33 9.3
UniRef50_A7T2G6 Cluster: Predicted protein; n=2; Nematostella ve... 33 9.3
>UniRef50_UPI0000DB6B51 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein L3 CG8288-PA; n=1; Apis mellifera|Rep:
PREDICTED: similar to mitochondrial ribosomal protein L3
CG8288-PA - Apis mellifera
Length = 352
Score = 337 bits (828), Expect = 2e-91
Identities = 149/224 (66%), Positives = 183/224 (81%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPS 538
P+W K+G+KV TTL+Q+VDN V+KYIPPEEYKP+ ++ + K GC+++GA N+DP
Sbjct: 101 PMWLKNGRKVLTTLIQIVDNEVVKYIPPEEYKPV--KPIRHRIEVKNGCLVLGAINVDPQ 158
Query: 537 VVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGF 358
++TK+Y GIF+ G+ PK+ L RF +SP + L GTPLYATHF+ G+ IDIR KT+DRGF
Sbjct: 159 LLTKEYYGIFNKAGVTPKKVLMRFTISPNAVLQPGTPLYATHFKPGEFIDIRGKTIDRGF 218
Query: 357 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKIL 178
QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG+ ARV PGTKMPGHMGNRWR L+GVKIL
Sbjct: 219 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGKLARVMPGTKMPGHMGNRWRILKGVKIL 278
Query: 177 RIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPT 46
RI+TKYNVIW L +PGE MCYL+DT+LP K++ T+P FPT
Sbjct: 279 RINTKYNVIWVLAQNVPGELNTMCYLYDTILPTKKS-TSPYFPT 321
>UniRef50_Q9VXQ0 Cluster: CG8288-PA; n=7; Neoptera|Rep: CG8288-PA -
Drosophila melanogaster (Fruit fly)
Length = 362
Score = 332 bits (817), Expect = 4e-90
Identities = 143/224 (63%), Positives = 181/224 (80%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPS 538
PLW K+G+++ TTLLQ+VDNHVIKYIPPEEY P V + K+ GCILVG+E +P+
Sbjct: 111 PLWLKNGERIRTTLLQIVDNHVIKYIPPEEYLPAQVPTVANLHKR--GCILVGSETTNPA 168
Query: 537 VVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGF 358
++TK+Y GIF + G+LPK++L RF+VSPE+ L GTPL HFRVGD +D+R KT+D GF
Sbjct: 169 LLTKEYAGIFRNSGVLPKKNLARFIVSPEAQLAPGTPLNVNHFRVGDFVDVRGKTVDHGF 228
Query: 357 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKIL 178
QGV+KR GFKGMPASHGVTKTHRR GNIG GGEK RVWPGTKMPGHMGNRWR ++G+++
Sbjct: 229 QGVVKRHGFKGMPASHGVTKTHRRAGNIGGGGEKGRVWPGTKMPGHMGNRWRIIKGLRVW 288
Query: 177 RIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPT 46
RI+TKYNV+W G ++ G TG + Y++DT+LP ++NK APPFPT
Sbjct: 289 RINTKYNVMWVQGSSVAGPTGGLVYIYDTILPTRKNKEAPPFPT 332
>UniRef50_UPI00015B6099 Cluster: PREDICTED: similar to Mitochondrial
39S ribosomal protein L3; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to Mitochondrial 39S ribosomal
protein L3 - Nasonia vitripennis
Length = 375
Score = 326 bits (801), Expect = 3e-88
Identities = 147/227 (64%), Positives = 180/227 (79%), Gaps = 3/227 (1%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPS 538
P+W KDGKKV TT+ QV DNHVIKYIPPEEYKPMI + + GC+LVGA++ DP
Sbjct: 117 PMWMKDGKKVLTTMFQVADNHVIKYIPPEEYKPMITQKKNPLPRNT-GCLLVGADSCDPQ 175
Query: 537 VVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGF 358
+ TK+YCG+F+ G++PKR L RF VSPE AL GTPL+ATH+++G IDIR KT+DRGF
Sbjct: 176 LFTKEYCGLFNEAGVMPKRLLARFHVSPEGALQPGTPLFATHYKIGQYIDIRGKTIDRGF 235
Query: 357 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKIL 178
QGVMKRWGF GMPASHGVTKTHRRPGNIGSGG+KARV PGTK+PGHMGNR+R ++ +I+
Sbjct: 236 QGVMKRWGFHGMPASHGVTKTHRRPGNIGSGGKKARVMPGTKLPGHMGNRYRIVKAQRIV 295
Query: 177 RIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNK--TAPP-FPT 46
RI+T+YNVIW LG A GET ++ +DT++PLK K +PP FPT
Sbjct: 296 RINTRYNVIWVLGQASAGETNSLVQFYDTIVPLKTCKALNSPPHFPT 342
>UniRef50_Q5DGM0 Cluster: SJCHGC01793 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC01793 protein - Schistosoma
japonicum (Blood fluke)
Length = 391
Score = 190 bits (463), Expect = 3e-47
Identities = 106/240 (44%), Positives = 143/240 (59%), Gaps = 16/240 (6%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMI------------KSNVKWVEKQKYG 574
PLW K G+K+ T+ QV DNH ++Y PP E I K W+ ++++G
Sbjct: 106 PLWTKTGEKMDCTVFQVPDNHALRYTPPSEIDKYISLLHPRHYWLNSKRPPSWITQKRWG 165
Query: 573 CILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDC 394
LVGA + D + G+ PKR + RF+VSP++AL GTPL HFRVGD
Sbjct: 166 IQLVGAFSADLLNSLLNGVAYLKEAGVPPKRKISRFLVSPDAALKPGTPLSVHHFRVGDY 225
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGN-IGSGGEKARVWPGTKMPGHM 217
+DI ++T++RGFQGV++RWG KG PA+HG TK HRR G+ G GG AR G +MPG M
Sbjct: 226 LDITARTINRGFQGVIERWGMKGGPAAHGSTKFHRRMGSAAGCGGPIAR---GKRMPGVM 282
Query: 216 GNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNK---TAPPFPT 46
GNR+R+LRGV I+RI+ K +I+ G A PG A C L D+ L ++ + PP PT
Sbjct: 283 GNRFRSLRGVMIVRINPKLGLIYVPG-ATPGPVHAYCLLHDSWLANRQRRLDANPPPVPT 341
>UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;
n=31; Deuterostomia|Rep: Mitochondrial 39S ribosomal
protein L3 - Homo sapiens (Human)
Length = 348
Score = 188 bits (458), Expect = 1e-46
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPS 538
PLW KDG+K TLLQV D HV+KY E K + VG + +
Sbjct: 108 PLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNG------------KMATLSVGGKTVSRF 155
Query: 537 VVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGF 358
+ +G+ PK+ + F ++ +A+ GTPLYA HFR G +D+ +KT+ +GF
Sbjct: 156 RKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGF 215
Query: 357 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKIL 178
QGVMKRWGFKG PA+HG TKTHRRPG + + G+ RVWPGTKMPG MGN +RT G+K+
Sbjct: 216 QGVMKRWGFKGQPATHGQTKTHRRPGAVAT-GDIGRVWPGTKMPGKMGNIYRTEYGLKVW 274
Query: 177 RIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAP-PFPT 46
RI+TK+N+I+ G ++PG + + D+ LP ++ PFPT
Sbjct: 275 RINTKHNIIYVNG-SVPGHKNCLVKVKDSKLPAYKDLGKNLPFPT 318
>UniRef50_A7SQV4 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 264
Score = 174 bits (423), Expect = 2e-42
Identities = 96/224 (42%), Positives = 129/224 (57%), Gaps = 1/224 (0%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAEN-IDPS 538
LW KDG+++ TL+Q+ D V++ + + E Q VGA N ++ +
Sbjct: 21 LWLKDGRRLPVTLIQIKDCEVVQARVAKGHG----GRDPQTELQ------VGAVNKLELN 70
Query: 537 VVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGF 358
+ K G F + PKR +C F V+P++ L GTP+ A HF G + I+ T D+GF
Sbjct: 71 QIGKAQFGHFKRFSVRPKRKVCSFPVTPDALLTPGTPITAAHFYPGQYVKIQGVTKDKGF 130
Query: 357 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKIL 178
QGVMKRWG G PASHG +KTHR+ G G G + RVWPG KM GHMGN+ TL V++
Sbjct: 131 QGVMKRWGMGGQPASHGQSKTHRKMGATGGGQDPGRVWPGKKMAGHMGNKNCTLHAVRVH 190
Query: 177 RIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPT 46
RI+TKYNV++ G PG TG + D KR+ APPFPT
Sbjct: 191 RINTKYNVLYVQG-QCPGPTGGFLKISDA---WKRHPHAPPFPT 230
>UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal
protein L3; n=2; Caenorhabditis|Rep: Putative
mitochondrial 39S ribosomal protein L3 - Caenorhabditis
elegans
Length = 403
Score = 162 bits (393), Expect = 9e-39
Identities = 94/237 (39%), Positives = 132/237 (55%), Gaps = 3/237 (1%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEE-YKPMIKSNVKWVEKQ-KYGCILVGAENID 544
P W +G ++ T+L+V +NHV+ PE YK K + + VGA N D
Sbjct: 114 PQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGNDD 173
Query: 543 PSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN-GTPLYATHFRVGDCIDIRSKTMD 367
P+ T Y F G+ K L F+V+ E ALP+ G PL A HF VG + KT+D
Sbjct: 174 PTKYTLGYRRQFVRAGIPVKEKLGCFLVT-EDALPSAGQPLDARHFGVGQYVTATGKTID 232
Query: 366 RGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGV 187
GFQG M RWG +G P + TK+HRR G++GS G+ AR+WPG +MPGHMG WRT+ G+
Sbjct: 233 WGFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGSVGD-ARIWPGKRMPGHMGYEWRTVSGL 290
Query: 186 KILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPTQPFMNDVPKE 16
+I+RI+ VI+ G ++PG+ G L D + KR K+ P P + + +E
Sbjct: 291 EIVRINVDKQVIYVKG-SVPGDIGETILLKDCLQEEKRLKSGPMPTWAPSLETIEEE 346
>UniRef50_Q5KGQ8 Cluster: Ribosomal large subunit assembly and
maintenance-related protein, putative; n=1;
Filobasidiella neoformans|Rep: Ribosomal large subunit
assembly and maintenance-related protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 308
Score = 151 bits (365), Expect = 2e-35
Identities = 86/238 (36%), Positives = 122/238 (51%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSV 535
LW DG++ T+LQV N V+++ PP P Y + +GA
Sbjct: 57 LWDADGRRWPVTVLQVDANQVVRHSPPPPTSP-------------YHTLQIGASPRREKT 103
Query: 534 VTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQ 355
TK G F G+ PK L F VS ++ +P GT L A HF G +D++ T+ +GFQ
Sbjct: 104 TTKQQLGHFKKAGVEPKYRLKEFQVSEDAVVPVGTELSAGHFVPGQFVDVQGVTIGKGFQ 163
Query: 354 GVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILR 175
GVMKR GF+G+ ASHG + HR PG+IG + RV PG KMPGHMGN RT + + I R
Sbjct: 164 GVMKRHGFRGLKASHGTSVKHRSPGSIGQNQDPGRVIPGKKMPGHMGNVTRTTQNLLIHR 223
Query: 174 IDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPTQPFMNDVPKEYLKTP 1
+D N+++ G +PG + Y+ D+ +K +P +PK + P
Sbjct: 224 VDHVLNLLYVRG-CVPGSDDSFLYVKDSKKLVKSKAQLALKKGKPEEEWLPKGVVSLP 280
>UniRef50_UPI0000E48888 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein L3; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mitochondrial
ribosomal protein L3 - Strongylocentrotus purpuratus
Length = 343
Score = 144 bits (348), Expect = 3e-33
Identities = 73/152 (48%), Positives = 96/152 (63%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPS 538
PLW K+GK+V TTLLQV++ +VI + P + ++ G +LV A+N P
Sbjct: 126 PLWTKEGKRVPTTLLQVLECNVIDFHP---------QGLNGSDRP--GTVLVAAKNAPPY 174
Query: 537 VVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGF 358
++Y +F SV + K H+ F V+ +AL GTPLYA HFR G +DI +KT+D+GF
Sbjct: 175 YKDEEYADLFKSVCLPVKEHITSFNVTDNAALQPGTPLYAAHFRPGMYVDIAAKTIDKGF 234
Query: 357 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 262
QGVMKRWG KG PASHG TKTHR+ G G GG
Sbjct: 235 QGVMKRWGMKGQPASHGATKTHRKMGGSGGGG 266
>UniRef50_A0D1W5 Cluster: Chromosome undetermined scaffold_34, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_34,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 409
Score = 134 bits (324), Expect = 2e-30
Identities = 74/199 (37%), Positives = 110/199 (55%)
Frame = -1
Query: 603 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPL 424
V+ V+ Y + +GA ++ + K G F + PK+++ F ++PE+ LP G L
Sbjct: 184 VQVVKNDTYTGLQIGAGRVNIKTLKKPQIGHFLKANIPPKKYIKEFPITPENTLPVGFML 243
Query: 423 YATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVW 244
A HF G IDI+ + +GF G +KR FK PA+HG + HR+ G+ G + RV+
Sbjct: 244 TARHFTPGQYIDIQGISTGKGFGGTVKRHNFKTQPATHGNSLCHRQLGSTGQRQDPGRVF 303
Query: 243 PGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKT 64
G KMPGH+GN T G++I RID +I+ G ++PG+ G++ YL D+ K+NK
Sbjct: 304 KGKKMPGHLGNDKVTCEGIQIYRIDAVRQLIYIKG-SVPGKPGSIVYLRDSWKAQKKNKE 362
Query: 63 APPFPTQPFMNDVPKEYLK 7
FPT N KEY K
Sbjct: 363 LLNFPTLAVENG--KEYAK 379
>UniRef50_Q9LRN8 Cluster: 50S ribosomal protein L3-2, chloroplast
precursor; n=6; Magnoliophyta|Rep: 50S ribosomal protein
L3-2, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 324
Score = 130 bits (314), Expect = 3e-29
Identities = 81/223 (36%), Positives = 114/223 (51%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSV 535
LW K GK++ ++L V DN I S VK VEK+ + +G P
Sbjct: 89 LWDKWGKRIPISILWVDDN--------------IVSQVKTVEKEGIFALQIGCGQKKPKH 134
Query: 534 VTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQ 355
++K G F + G+ KR L F V+ ++ LP GT L HF G +D+ T +GFQ
Sbjct: 135 LSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQ 194
Query: 354 GVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILR 175
G MKR GF GMPASHG + +HR G+ G +V+ G KM G MG RT++ V + +
Sbjct: 195 GCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYK 254
Query: 174 IDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPT 46
ID N++W G +PG G ++ D K + + PFPT
Sbjct: 255 IDPARNLMWVRG-QVPGAEGNFVFIKDAWCK-KPDISKLPFPT 295
>UniRef50_P31334 Cluster: 54S ribosomal protein L9, mitochondrial
precursor; n=6; Saccharomycetales|Rep: 54S ribosomal
protein L9, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 269
Score = 128 bits (310), Expect = 1e-28
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 1/169 (0%)
Frame = -1
Query: 591 EKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESAL-PNGTPLYAT 415
E Y VG + S V++ G F S + PK H+ F V E L P GT L +
Sbjct: 99 EVNGYFACQVGYGSRHLSKVSRQMLGHFASKVVNPKEHVAEFRVKDEKGLIPPGTLLKPS 158
Query: 414 HFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGT 235
F+ G +D+RS + +GF GVMKR+GFKG+ ASHG + HR G+ G + RV PG
Sbjct: 159 FFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPGR 218
Query: 234 KMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
KMPGHMGN T++ VK+L++D + NVIW G ++ G + + D +
Sbjct: 219 KMPGHMGNEHVTIQNVKVLKVDDENNVIWVKG-SVAGPKNSFVKIQDAI 266
>UniRef50_Q0CHL1 Cluster: 60S ribosomal protein L9, mitochondrial;
n=11; Eukaryota|Rep: 60S ribosomal protein L9,
mitochondrial - Aspergillus terreus (strain NIH 2624)
Length = 335
Score = 126 bits (304), Expect = 5e-28
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Frame = -1
Query: 579 YGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESAL-PNGTPLYATHFRV 403
Y + VGA PS VTK G F + G+ PKRH+ F V E+ L P G + A+ FR
Sbjct: 159 YYAVQVGAGWKHPSNVTKSLLGHFSAHGVSPKRHVFEFRVRDEAGLLPVGRDIPASWFRE 218
Query: 402 GDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIG-SGGEKARVWPGTKMP 226
G +D RS T +GF GVMKR GF G SHGV+ THR G+ G S G +RV+PG KM
Sbjct: 219 GQFVDARSTTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSMGSAGPSQGGGSRVYPGKKMA 278
Query: 225 GHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
G+MGN T++ +K+L++D + ++ G A+ G G + + D +
Sbjct: 279 GNMGNEQNTVQNLKVLKVDPENGIVVVQG-AVSGPKGCVVRIQDAI 323
>UniRef50_Q54I61 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 351
Score = 124 bits (300), Expect = 2e-27
Identities = 73/187 (39%), Positives = 104/187 (55%), Gaps = 2/187 (1%)
Frame = -1
Query: 570 ILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESA-LPNGTPLYATHFRVGDC 394
I VGA+ I V+K G F + PKR L F V+ + L GTP+ HF G
Sbjct: 112 IQVGADEIKLKNVSKTLQGHFAKANVPPKRVLMEFRVTRNAMNLELGTPILPKHFLPGQL 171
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
I ++ +GF G MKRW F G PA+HGV+ THR G+ G RV+ G KMPG +G
Sbjct: 172 ITVKGTNTGKGFAGGMKRWHFSGQPATHGVSLTHRAIGSTGCRQTPGRVFKGRKMPGRLG 231
Query: 213 NRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPTQ-PF 37
+ T++ +++L+I+T+ N + G A+PG+ G YL T + K APPFPT P
Sbjct: 232 GKSCTVKNLQVLKINTEMNCLLVKG-AVPGKKGG--YLKITDSRSMKWKEAPPFPTYFPT 288
Query: 36 MNDVPKE 16
++D+ K+
Sbjct: 289 LDDMIKD 295
>UniRef50_A5CCL2 Cluster: 50S ribosomal protein L3; n=1; Orientia
tsutsugamushi Boryong|Rep: 50S ribosomal protein L3 -
Orientia tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 229
Score = 124 bits (299), Expect = 2e-27
Identities = 62/174 (35%), Positives = 102/174 (58%)
Frame = -1
Query: 600 KWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLY 421
K V K Y +++G +NI P V K IF + PK + F V+ + L + L
Sbjct: 55 KLVSKDGYNAVILGYKNISPFKVKKPMHSIFSRAKIEPKAIIKEFKVAEDKMLEIASILD 114
Query: 420 ATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWP 241
A++FRVG +D+R T+ +GF G MKR GF+G+ ASHGV+ +HR G+ G+ R +
Sbjct: 115 ASYFRVGQYVDVRGVTIGKGFAGAMKRHGFRGLEASHGVSISHRSHGSTGNRAYPGRTFK 174
Query: 240 GTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPL 79
KM GHMG R+ T++ +++ +D + ++ G +IPG++G++ Y+ D++ L
Sbjct: 175 NKKMAGHMGVRFATIQNLRVDSVDLEKRLLVIQG-SIPGKSGSIVYITDSIKKL 227
>UniRef50_Q00RY2 Cluster: Putative ribosomal protein L3; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein L3 -
Ostreococcus tauri
Length = 312
Score = 122 bits (293), Expect = 1e-26
Identities = 69/178 (38%), Positives = 91/178 (51%)
Frame = -1
Query: 579 YGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVG 400
Y + +G VTK G F G KR L F VS L GT + A HF G
Sbjct: 106 YDAVQIGYGARKAKGVTKAELGHFVRHGSGIKRGLKEFRVSRCGTLTPGTVITAAHFAAG 165
Query: 399 DCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGH 220
+D+ T +GFQG MKRWGF G PA+HG TK HR G+IG + RV+ G KM G
Sbjct: 166 QYVDVGGTTKGKGFQGPMKRWGFAGQPATHGNTKKHRAHGSIGQCQDPGRVFKGKKMAGR 225
Query: 219 MGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPT 46
MG R RT++ + ++DT+ N+++ G IPG G + D + + PFPT
Sbjct: 226 MGGRRRTVQSAYVWKVDTERNLLYIKG-QIPGGAGTAVTIRDALRKPPKLGEQVPFPT 282
>UniRef50_Q9P6P6 Cluster: Mitochondrial ribosomal protein subunit
L9; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit L9 - Schizosaccharomyces pombe
(Fission yeast)
Length = 259
Score = 121 bits (291), Expect = 2e-26
Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = -1
Query: 606 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTP 427
+V+ EK Y + VG+ P +TK G F S + PK H+ F V S L +
Sbjct: 79 DVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGT 138
Query: 426 LYAT-HFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKAR 250
++ T +F+ +D++ T +GF GVMKRWGF G ASHG + +HR PG+ G +R
Sbjct: 139 IFTTDYFKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSR 198
Query: 249 VWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
V PG KM GHMG+R RT++ + + +D I G +IPG + Y+ DT+
Sbjct: 199 VLPGRKMAGHMGHRSRTVKNLLVWAVDADLECILVKG-SIPGPNKSAVYVTDTI 251
>UniRef50_Q6C279 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 277
Score = 118 bits (284), Expect = 1e-25
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 3/172 (1%)
Frame = -1
Query: 600 KWVEKQKYGCILVGAENIDPSV--VTKDYCGIFDSVGMLPKRHLCRFVV-SPESALPNGT 430
K EK Y + VG + + ++ + K G F + + PK+ + F + + LP T
Sbjct: 85 KTEEKHGYNAVQVGMGHRNKALQKMNKSKLGQFSAATVNPKQAVAEFRIRGKDGLLPITT 144
Query: 429 PLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKAR 250
+ A+HF+VG +D+++ + +GF GVMKR GF G+PASHGV+ HR G G + R
Sbjct: 145 EITASHFKVGQYVDVQATSKGKGFSGVMKRHGFSGLPASHGVSLKHRSGGTTGQNTDPGR 204
Query: 249 VWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFD 94
V+PG KM G+MGN TL+ K+L +D ++ G+ +PG G + L D
Sbjct: 205 VFPGRKMAGNMGNETVTLKNQKVLSVDEDTGIVIVKGM-VPGSKGKIVKLSD 255
>UniRef50_Q22HG3 Cluster: Ribosomal protein L3 containing protein;
n=1; Tetrahymena thermophila SB210|Rep: Ribosomal
protein L3 containing protein - Tetrahymena thermophila
SB210
Length = 488
Score = 113 bits (271), Expect = 5e-24
Identities = 62/186 (33%), Positives = 96/186 (51%)
Frame = -1
Query: 603 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPL 424
VK EK + +G + K G + PKRHL F VSP+ LP G L
Sbjct: 270 VKTEEKDGVNALQLGVGEKSLKRINKPTIGHLMKNDIPPKRHLKEFKVSPDCFLPAGYML 329
Query: 423 YATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVW 244
A HF G +DI+ ++ +GF G +KRW FK A+HG + +HR PG+ G + RV+
Sbjct: 330 SARHFVPGQYVDIQGISVGKGFAGTVKRWNFKMQDATHGNSLSHRAPGSTGQRQDPGRVF 389
Query: 243 PGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKT 64
KM GHMG T+ +++ +ID + ++++ G +PG+ G++ + D +N+
Sbjct: 390 KNKKMAGHMGCEKVTIMDLQVYKIDVERSLVYIRG-HVPGKPGSLVQIRDAFKKQVQNEQ 448
Query: 63 APPFPT 46
FPT
Sbjct: 449 FLNFPT 454
>UniRef50_Q2JFH6 Cluster: 50S ribosomal protein L3; n=53;
Bacteria|Rep: 50S ribosomal protein L3 - Frankia sp.
(strain CcI3)
Length = 235
Score = 113 bits (271), Expect = 5e-24
Identities = 62/197 (31%), Positives = 96/197 (48%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G K+ T + +N V+ + + P + + VK + Y + +G +DP + K
Sbjct: 11 GTKLGMTQVWDANNRVVP-VTVIKAGPNVVTQVKTPDSDGYSAVQLGYGEVDPRKINKPA 69
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F + G+ P+RHL + G L F G +D+ + +GF GVMKR
Sbjct: 70 RGHFATSGVTPRRHLVELRTADAGNYRPGQELTGEVFSAGTVVDVTGTSKGKGFAGVMKR 129
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
GFKG+ A HGV + HR PG++G RV+ G +M G MG+ T G+ I +DT+
Sbjct: 130 HGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKGLRMAGRMGHVRTTTSGLTIHAVDTER 189
Query: 159 NVIWTLGVAIPGETGAM 109
+ G A+PG G +
Sbjct: 190 GYLLVRG-AVPGPDGGL 205
>UniRef50_Q1AU29 Cluster: 50S ribosomal protein L3; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: 50S ribosomal protein L3 -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 205
Score = 110 bits (265), Expect = 3e-23
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 1/175 (0%)
Frame = -1
Query: 630 EYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFV-VSP 454
E +P + + VK EK Y + VG + V + + G+F + + P+R+L VS
Sbjct: 29 EVEPNVVTAVKTAEKDGYEAVQVGFGAVKSGRVNRPHAGVFAKLDIPPRRYLRELRGVSG 88
Query: 453 ESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNI 274
E G + A F GD + + +++ RGFQG +KR GF P +HG + R+PG++
Sbjct: 89 EV----GQTIGADAFEAGDRVHVSARSKGRGFQGTVKRHGFGRGPVTHG-SHNIRQPGSV 143
Query: 273 GSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAM 109
G+ + +R++ G +MPGHMG+R T+R ++++R+D + N IW G +PG A+
Sbjct: 144 GASADPSRIFKGQRMPGHMGDRSVTVRNLEVVRVDAERNEIWVRG-GVPGGRNAI 197
>UniRef50_Q28UW2 Cluster: 50S ribosomal protein L3; n=93;
Proteobacteria|Rep: 50S ribosomal protein L3 -
Jannaschia sp. (strain CCS1)
Length = 290
Score = 107 bits (258), Expect = 2e-22
Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 1/214 (0%)
Frame = -1
Query: 696 KKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYC 517
KKV T L + D I + K + + K + Y + +GA +
Sbjct: 9 KKVGMTRLFMEDGKQIPVTVLQLDKLQVVAK-KTSDSDGYSAVQLGAGTAKAKRTSAPMR 67
Query: 516 GIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRW 337
G+F + PKR L F V ++ + G + A H+ G +D+ ++ +GFQG MKR
Sbjct: 68 GVFAKASVEPKRKLVEFRVDADNLIEVGEEIIADHYFEGQFVDVTGTSIGKGFQGAMKRH 127
Query: 336 GFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYN 157
F G+ ASHGV+ +HR G+ G + RV+ G KM GHMG T + ++I+R DT
Sbjct: 128 NFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLQIVRTDTDRG 187
Query: 156 VIWTLGVAIPGETGAMCYLFDTV-LPLKRNKTAP 58
+I G A+PG G + D V P N P
Sbjct: 188 LIMIKG-AVPGSKGGWVTVKDAVKKPFPENAILP 220
>UniRef50_P60454 Cluster: 50S ribosomal protein L3; n=14;
Bacteria|Rep: 50S ribosomal protein L3 - Geobacter
sulfurreducens
Length = 210
Score = 107 bits (258), Expect = 2e-22
Identities = 60/166 (36%), Positives = 90/166 (54%)
Frame = -1
Query: 579 YGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVG 400
Y I VG + + VTK G + G H+ F + G + A F VG
Sbjct: 46 YDAIQVGFLSQEARKVTKPMLGHIKAAGQGAFAHIREFRLDDVDRYNVGDVISADAFEVG 105
Query: 399 DCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGH 220
+ ID+ ++ +GFQGV+KRWGF+G +SHG + HR PG+IGS +RV+ KMPG
Sbjct: 106 EYIDVTGTSIGKGFQGVIKRWGFRGGRSSHG-SCFHRAPGSIGSSAYPSRVFKNKKMPGQ 164
Query: 219 MGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLP 82
+GN T++ ++++R+D N++ G AIPG + + DTV P
Sbjct: 165 LGNERVTVQRLQVVRVDAADNILLIKG-AIPGAKNGIVLVKDTVKP 209
>UniRef50_Q873B3 Cluster: Related to ribosomal protein L3,
mitochondrial; n=6; Pezizomycotina|Rep: Related to
ribosomal protein L3, mitochondrial - Neurospora crassa
Length = 384
Score = 107 bits (257), Expect = 3e-22
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 2/180 (1%)
Frame = -1
Query: 588 KQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVV-SPESALPNGTPLYATH 412
K Y + VG V G +++ G+ PK+ L F V + + LP G L+
Sbjct: 148 KNGYWAVQVGLGERRAENVGAPQLGYYEAKGIPPKQTLAEFKVRNQDGLLPVGVQLFPDW 207
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNI-GSGGEKARVWPGT 235
F VG +D+R T GF G MKR GF G ASHG + HR G++ GS G +RV PG
Sbjct: 208 FHVGQVVDVRGITRGMGFAGGMKRHGFAGQEASHGNSLNHRTIGSVGGSQGSGSRVLPGK 267
Query: 234 KMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPP 55
KMPG MG + T++ + IL +D + ++ G A+ G GA+ + D V K APP
Sbjct: 268 KMPGRMGAQQHTVQNLPILMVDNELGIVVVKG-AVAGHKGAVVKVQDAV------KKAPP 320
>UniRef50_Q9SKX4 Cluster: 50S ribosomal protein L3-1, chloroplast
precursor; n=15; cellular organisms|Rep: 50S ribosomal
protein L3-1, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 271
Score = 107 bits (257), Expect = 3e-22
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Frame = -1
Query: 615 IKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRF-VVSPESALP 439
I + +K + Y + +G + +TK G G +P RHL F + + E P
Sbjct: 88 IVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEP 147
Query: 438 NGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGE 259
N ++ F+ GD +D+ T+ +GFQG +KR FK +HG +K+HR G+IG+G
Sbjct: 148 NQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGSIGAGTT 206
Query: 258 KARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 115
RV+ G KMPG MG +R +KI+++D + NV+ G A+PG+ G
Sbjct: 207 PGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKG-ALPGKPG 253
>UniRef50_Q9L0E0 Cluster: 50S ribosomal protein L3; n=35;
Bacteria|Rep: 50S ribosomal protein L3 - Streptomyces
coelicolor
Length = 214
Score = 106 bits (255), Expect = 5e-22
Identities = 61/197 (30%), Positives = 96/197 (48%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+K+ T + +N V+ + + P + + V+ + Y + + IDP V K
Sbjct: 10 GEKLGMTQVWDENNRVVP-VTVVKAGPNVVTQVRTNDVDGYESVQIAFGEIDPRKVNKPL 68
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F + P+RHL + S G + A F G +D+ +K+ +GF GVMKR
Sbjct: 69 KGHFAKADVTPRRHLVEIRTAAASEYTLGQEITAEAFESGVKVDVTAKSKGKGFAGVMKR 128
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
FKG ASHG + HR PG+IG RV+ G +M G MGN T + + + +D +
Sbjct: 129 HNFKGGKASHGAHRVHRMPGSIGGCATPGRVFKGMRMAGRMGNERVTTQNLTVHAVDAEK 188
Query: 159 NVIWTLGVAIPGETGAM 109
++ G A+PG G +
Sbjct: 189 GLLLIKG-AVPGPNGGL 204
>UniRef50_Q5AAK4 Cluster: Likely mitochondrial ribosomal protein;
n=4; Saccharomycetales|Rep: Likely mitochondrial
ribosomal protein - Candida albicans (Yeast)
Length = 293
Score = 103 bits (248), Expect = 3e-21
Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Frame = -1
Query: 579 YGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSP-----ESAL-PNGTPLYA 418
Y +++G + +V + + IF++ + PK+ + F + ES L P GT L A
Sbjct: 110 YTAVIMGTIDKLKNVKSTNDLRIFETAKVSPKQKIGEFKIRSIDNDIESKLIPVGTELTA 169
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 238
+F VG +D++ T +GF GVMKRWGF G A+HG +K HR PG G RV+PG
Sbjct: 170 DYFSVGQKVDVKGVTKGKGFAGVMKRWGFSGGRATHGTSKAHRTPGATGGNQNPGRVFPG 229
Query: 237 TKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
KMPG MG++ T +++L D + ++ G +PG ++ + D +
Sbjct: 230 KKMPGRMGHQNNTGFNLEVLHTDGEAGILIVKG-NVPGPKKSIIKVSDAI 278
>UniRef50_Q6UCS0 Cluster: 50S ribosomal protein L3; n=1; uncultured
marine alpha proteobacterium HOT2C01|Rep: 50S ribosomal
protein L3 - uncultured marine alpha proteobacterium
HOT2C01
Length = 229
Score = 103 bits (246), Expect = 6e-21
Identities = 56/168 (33%), Positives = 91/168 (54%)
Frame = -1
Query: 591 EKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATH 412
E + +LVGA + + K G FD ++L F +S + + +G L A+H
Sbjct: 42 ENENSDKVLVGACKLKKT--KKSQKGFFDKKKTDAYKYLREFEISKDQEIKSGDELKASH 99
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F+ G ID+ T +GF GVMKR F G+ ASHGV+ +HR G+ G + +V+ G K
Sbjct: 100 FKEGQFIDVSGYTKGKGFAGVMKRHNFSGLRASHGVSVSHRSHGSTGQCQDPGKVFKGKK 159
Query: 231 MPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
M G G+ +TL+ ++++++D + N+I G A PG G + D++
Sbjct: 160 MAGQYGDVHKTLQSLQVVKVDEQKNLICVKG-ATPGSRGTWLVVEDSI 206
>UniRef50_Q08TH3 Cluster: 50S ribosomal protein L3; n=2;
Cystobacterineae|Rep: 50S ribosomal protein L3 -
Stigmatella aurantiaca DW4/3-1
Length = 259
Score = 102 bits (245), Expect = 8e-21
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 3/171 (1%)
Frame = -1
Query: 591 EKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN--GTPLYA 418
EK +Y + +G I V+ + G F +RHL F V+PE A G + A
Sbjct: 77 EKDQYSAVTLGFGEIREKVLNQAQRGFFKKNSAALRRHLKEFRVTPEDAAQFNVGDAVKA 136
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPA-SHGVTKTHRRPGNIGSGGEKARVWP 241
F G +D+ T RGF GVM+RW FKG +HG + R PG IG R +P
Sbjct: 137 DLFTKGQLVDVTGTTKGRGFSGVMRRWSFKGSQTKTHGTHEYQRHPGAIGQRKTPGRTYP 196
Query: 240 GTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
KMPGH G T + + ++ +DT+ ++ G A+PG A+ Y+ +V
Sbjct: 197 NKKMPGHYGVEQVTTQNLTVVDVDTEKGLLLIKG-AVPGHNDAIVYVRPSV 246
>UniRef50_A4RTL3 Cluster: Plastid ribosomal protein L3, imported to
chloroplast, large ribosomal subunit; n=2;
Ostreococcus|Rep: Plastid ribosomal protein L3, imported
to chloroplast, large ribosomal subunit - Ostreococcus
lucimarinus CCE9901
Length = 241
Score = 102 bits (245), Expect = 8e-21
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 1/171 (0%)
Frame = -1
Query: 615 IKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 436
+ + VK Y + VG + + +TK G G RHL F +
Sbjct: 57 VVTQVKTEATDGYNAVQVGYDAVRDDKLTKPELGHCKKAGAPALRHLEEFRLRDAPTYEV 116
Query: 435 GTPLYATH-FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGE 259
G + T F+ GD +D+R +T+ +GFQG +KR+GF +HG +K+HR+ G+IGSG
Sbjct: 117 GAQIKPTELFKEGDKVDVRGRTIGKGFQGAVKRYGFSRGLMTHG-SKSHRQHGSIGSGTN 175
Query: 258 KARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMC 106
R++PG +M GHMGN T +G+ ++ ++ + I G +PG+ GA+C
Sbjct: 176 PGRIYPGKRMHGHMGNEMVTTKGLTVVSVED--DCIIVKG-NVPGKKGALC 223
>UniRef50_Q67JU3 Cluster: 50S ribosomal protein L3; n=55;
Firmicutes|Rep: 50S ribosomal protein L3 -
Symbiobacterium thermophilum
Length = 216
Score = 102 bits (245), Expect = 8e-21
Identities = 63/204 (30%), Positives = 104/204 (50%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
GKK+ T + D +I + E P + K Y + +G I ++V K
Sbjct: 7 GKKLGMTQIFAPDGKIIP-VTVVEAGPCVVVQKKTTATDGYNAVQLGFGEIRETLVNKPL 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F+ + R+L F + +L G + A F G+ +D+ + +GF G +KR
Sbjct: 66 KGHFEKHQVKATRYLREFRLDDVESLNVGDVIKADIFAEGELVDVTGISRGKGFAGGVKR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
W F P+SHG +K HRRPG++G ARV G K+PG +G T+ G++++++D +
Sbjct: 126 WNFNRGPSSHG-SKYHRRPGSLGQ-RRWARVPKGRKLPGRLGGERVTVLGLRVVKVDPEK 183
Query: 159 NVIWTLGVAIPGETGAMCYLFDTV 88
N+I G A+PG G++ + D+V
Sbjct: 184 NLILIKG-AVPGAKGSLITIRDSV 206
>UniRef50_Q8XHS3 Cluster: 50S ribosomal protein L3; n=7;
Bacteria|Rep: 50S ribosomal protein L3 - Clostridium
perfringens
Length = 209
Score = 100 bits (239), Expect = 4e-20
Identities = 61/192 (31%), Positives = 95/192 (49%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
GKKV T + + VI + E P + K VE Y I VG + +V K
Sbjct: 7 GKKVGMTQIFDENGRVIP-VTVVEAGPCVVVQKKTVETDGYDAIQVGFGELREKLVNKPR 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F G+ +R L F + + G + F +GD +D+ + +GFQG +KR
Sbjct: 66 KGHFAKAGVSLRRTLKEFRMEDVANYNVGDEIKVDTFEIGDKVDVSGVSKGKGFQGTIKR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
W P SHG +K HR PG++G+ + +R + +MPGHMG + T+ +++++I +
Sbjct: 126 WNASRGPMSHG-SKFHRAPGSMGAASDPSRTFKNKRMPGHMGAKNTTVLNLEVVKIMPEK 184
Query: 159 NVIWTLGVAIPG 124
N+I G IPG
Sbjct: 185 NIILIKG-GIPG 195
>UniRef50_Q3A9R6 Cluster: 50S ribosomal protein L3; n=3;
Bacteria|Rep: 50S ribosomal protein L3 -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 209
Score = 99.1 bits (236), Expect = 9e-20
Identities = 62/204 (30%), Positives = 103/204 (50%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+KV T + D I + E P + K + Y I +G I S V K
Sbjct: 7 GRKVGMTQIFTEDGRAIP-VTVIEAGPCVVVQKKTIANDGYNAIQLGFGEIKESKVNKPL 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F+ + P R+L V A G + F VG+ +D+ + +GF G +KR
Sbjct: 66 KGHFNRANVKPMRYLREIRVENIDAYEVGQEIKVDIFTVGEKVDVTGISKGKGFAGGIKR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
GF P +HG +K HRRPG++G+ G ARV+ G K+PG +G T++ ++++++D +
Sbjct: 126 HGFHRGPMAHG-SKYHRRPGSLGAKG-PARVFLGRKLPGRLGMERVTIQNLEVVKVDPER 183
Query: 159 NVIWTLGVAIPGETGAMCYLFDTV 88
N++ G ++PG G++ + + V
Sbjct: 184 NLLVIKG-SVPGIRGSLLIIKEAV 206
>UniRef50_A3EVS1 Cluster: 50S ribosomal protein L3; n=1;
Leptospirillum sp. Group II UBA|Rep: 50S ribosomal
protein L3 - Leptospirillum sp. Group II UBA
Length = 207
Score = 98.3 bits (234), Expect = 2e-19
Identities = 61/196 (31%), Positives = 98/196 (50%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+K+ T + + + + E P VK EK+ Y +G + P + K
Sbjct: 6 GRKLGMTQIYLPSGQAVP-VTIVEAGPCEVLQVKTSEKEGYSAAQIGYFPVSPKHLNKPE 64
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G R++ F V + P G L F+ GD +DI ++ +GF GVMKR
Sbjct: 65 RGHQQKYAKNLYRYVREFKVEENTQAP-GNILTVEIFQEGDSLDITGQSKGKGFAGVMKR 123
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
F+G A+HG + HR PG+IGS +RV K+PGHMG++ T++ +K++ + +
Sbjct: 124 HHFRGGDATHG-SMFHREPGSIGSSAYPSRVLKNKKLPGHMGDKRITVKNLKLIAVKPEA 182
Query: 159 NVIWTLGVAIPGETGA 112
N+++ G AIPG G+
Sbjct: 183 NLLFIKG-AIPGSNGS 197
>UniRef50_Q9HWD5 Cluster: 50S ribosomal protein L3; n=19;
Proteobacteria|Rep: 50S ribosomal protein L3 -
Pseudomonas aeruginosa
Length = 211
Score = 97.1 bits (231), Expect = 4e-19
Identities = 55/172 (31%), Positives = 86/172 (50%)
Frame = -1
Query: 630 EYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPE 451
E +P + K E Y + V A S VTK G F + R + F + E
Sbjct: 29 EVEPNRVTQFKTEETDGYRAVQVTAGERRASRVTKAQAGHFAKANVAAGRGVWEFRLGEE 88
Query: 450 SALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIG 271
G + F+ G +D+ ++ +GF G +KRW F+G +HG + +HR PG+IG
Sbjct: 89 QYAA-GDQITVDLFQAGQMVDVTGESKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPGSIG 147
Query: 270 SGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 115
RV+ G KM GH+G T++ ++I+R+D + N++ G A+PG TG
Sbjct: 148 QCQTPGRVFKGKKMSGHLGAERVTVQSLEIVRVDAERNLLLVKG-AVPGATG 198
>UniRef50_Q580R4 Cluster: Ribosomal protein L3 mitochondrial,
putative; n=6; Trypanosomatidae|Rep: Ribosomal protein
L3 mitochondrial, putative - Trypanosoma brucei
Length = 473
Score = 96.3 bits (229), Expect = 7e-19
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Frame = -1
Query: 570 ILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCR-FVVSPESALPNGTPLYATHFRVGDC 394
+ VGA N+ P K + F +P +H+C F ++P++ P GT L HF+ G
Sbjct: 185 VYVGAMNV-PVEFHKPHVAAFYKAAGVPVKHVCAGFPITPDAYAPVGTKLDVRHFKPGQE 243
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
+ I + D GF+GVM R GF G G ++ RRPG +G+ G+K R++PG +M G G
Sbjct: 244 VTITFQNTDYGFRGVMFRHGFDGGYVWLGDSRWQRRPGAMGTEGQK-RIYPGHRMAGQTG 302
Query: 213 NRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV----LPL-KRNKTAPPFP 49
T +GV + RID K ++I+ L + + G DT+ L L ++ P FP
Sbjct: 303 AAAETYQGVPVWRIDYKNSLIY-LPTLLDADVGTYVRFSDTINTKGLTLWNEHRGLPAFP 361
Query: 48 T 46
T
Sbjct: 362 T 362
>UniRef50_Q3YRK9 Cluster: 50S ribosomal protein L3; n=3;
Anaplasmataceae|Rep: 50S ribosomal protein L3 -
Ehrlichia canis (strain Jake)
Length = 231
Score = 96.3 bits (229), Expect = 7e-19
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 1/206 (0%)
Frame = -1
Query: 702 DGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSV-VTK 526
+GK++ TLL + D+ +I + K + Y +++G E+ SV + K
Sbjct: 21 EGKRIPVTLLHLRDSFII--------------STKTKDINGYNAVVLGVES---SVNIKK 63
Query: 525 DYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVM 346
I + + K + V + G + THF ID+ ++ +GF GVM
Sbjct: 64 PQLKILEKSNITAKCRIFESRVDNLDGIVKGAKISITHFVENQYIDVTGYSLGKGFAGVM 123
Query: 345 KRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDT 166
KR FKG+ ASHGV+ HR G+ G + RV+ G KM GH+G+ T++ +K++ +D
Sbjct: 124 KRHNFKGLKASHGVSIAHRSQGSTGQCQDPGRVYKGKKMAGHLGSSKVTVQNLKVILVDQ 183
Query: 165 KYNVIWTLGVAIPGETGAMCYLFDTV 88
+ +++ G IPG G+ ++ D V
Sbjct: 184 ERSLLVVKGNNIPGAKGSYVFVKDAV 209
>UniRef50_Q6MJ15 Cluster: 50S ribosomal protein L3; n=1;
Bdellovibrio bacteriovorus|Rep: 50S ribosomal protein L3
- Bdellovibrio bacteriovorus
Length = 220
Score = 95.9 bits (228), Expect = 9e-19
Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 4/180 (2%)
Frame = -1
Query: 627 YKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPES 448
Y+P S +K E Y I V K G + G + +FV
Sbjct: 43 YEPWFVSQIKTNEADGYEAIQVACHPKKAKNSNKAEKGHLEKAGF---ENGAQFVKELRQ 99
Query: 447 ALPNGTPLYAT----HFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPG 280
A P GT + A GD + I SK+ +GF G +KRWGF G PASHG +K HRRPG
Sbjct: 100 AAPEGTVVGAQISIDSLAKGDFVKITSKSKGKGFAGSVKRWGFAGGPASHG-SKFHRRPG 158
Query: 279 NIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYL 100
+ G+ RV PG K PGH+G T++ V++++I + NV+ G +PG + L
Sbjct: 159 SSGNRTWPGRVMPGKKFPGHLGAETVTVKNVEVVQIIAEENVLMVKG-PVPGARNTLVKL 217
>UniRef50_A6PR85 Cluster: 50S ribosomal protein L3; n=2;
Chlamydiae/Verrucomicrobia group|Rep: 50S ribosomal
protein L3 - Victivallis vadensis ATCC BAA-548
Length = 218
Score = 95.5 bits (227), Expect = 1e-18
Identities = 73/204 (35%), Positives = 103/204 (50%), Gaps = 7/204 (3%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNH-VIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKD 523
G+KV T QV D V+ + + P + ++VK VE+ Y + +G VTK
Sbjct: 6 GRKVGMT--QVYDEKGVLIPVTVVQAGPCVVTDVKTVERDGYSAVQLGFGERKAKNVTKA 63
Query: 522 YCGIFDSVGM----LPK--RHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRG 361
G G+ LP R + R E+ P GT L A F D +D+ T RG
Sbjct: 64 RAGHLAKAGVTGDKLPSVLREI-RTAAGDEAPAP-GTVLNADVFEANDYLDVVGTTKGRG 121
Query: 360 FQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKI 181
FQGV++R+ F G ASHG T RR G+IG V G +MPGHMGN RT++ +++
Sbjct: 122 FQGVVRRYRFGGGRASHGGVWT-RRTGSIGCCEWPGNVIKGKRMPGHMGNVPRTVQNLQV 180
Query: 180 LRIDTKYNVIWTLGVAIPGETGAM 109
+R+ + NV+ G AIPG G +
Sbjct: 181 VRVMAEDNVLLVKG-AIPGANGGI 203
>UniRef50_Q97EH8 Cluster: 50S ribosomal protein L3; n=12;
Bacteria|Rep: 50S ribosomal protein L3 - Clostridium
acetobutylicum
Length = 209
Score = 94.7 bits (225), Expect = 2e-18
Identities = 60/204 (29%), Positives = 99/204 (48%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
GKK+ T + + V+ + E P + K EK+ Y I VG I +V K
Sbjct: 7 GKKLGMTQIFNEEGKVVP-VTVIEAGPCVVIQKKTSEKEGYDAIQVGFGTIREKLVNKPL 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F + KR + F + S+ G + A F G+ +D+ + +GFQG ++R
Sbjct: 66 KGHFAKGNVELKRFVKEFRLEDTSSYEVGAEIKADIFAAGEKVDVSGVSKGKGFQGTIRR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
WG P SHG +K HR G++G + +R + KMPGHMG+ T+ V++ ++ +
Sbjct: 126 WGAHRGPMSHG-SKFHRAVGSMGGSSDPSRTFKSKKMPGHMGHVNTTVLNVEVAKVIPEK 184
Query: 159 NVIWTLGVAIPGETGAMCYLFDTV 88
N+I G +PG + + ++V
Sbjct: 185 NLILIKG-GVPGPNKSFVVIKNSV 207
>UniRef50_O66431 Cluster: 50S ribosomal protein L3; n=9;
Bacteria|Rep: 50S ribosomal protein L3 - Aquifex
aeolicus
Length = 241
Score = 93.9 bits (223), Expect = 4e-18
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 4/232 (1%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIP---PEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVT 529
G+KV T + + D I P Y +KS K Y + +GA +T
Sbjct: 7 GEKVGMTRVLLKDGTAIPVTVIKFPVNYVVQVKSQNT---KDGYNALQIGAYEAKEKHLT 63
Query: 528 KDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATH-FRVGDCIDIRSKTMDRGFQG 352
K G F G+ R L F V +G L F+ GD +D+ + RGF G
Sbjct: 64 KPLIGHFKKHGVPLLRRLWEFRVDNPEEFQSGQQLKVEDVFKPGDLVDVWGISKGRGFAG 123
Query: 351 VMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRI 172
MKRW F G P SHG + HR G IG + RVW G +MPGH G + ++G+ ++ +
Sbjct: 124 AMKRWDFAGFPKSHG-HRYHRAVGAIGQRTDPGRVWKGKRMPGHYGAKPVRVQGLFVVDV 182
Query: 171 DTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPTQPFMNDVPKE 16
+ N I G ++PG + + + + ++++ Q + ++ KE
Sbjct: 183 LPEENAILVKG-SVPGHNKGIVVVEQSTIAYRKSQKLKQKRYQFIIENLAKE 233
>UniRef50_Q3ZZM4 Cluster: 50S ribosomal protein L3; n=10; cellular
organisms|Rep: 50S ribosomal protein L3 -
Dehalococcoides sp. (strain CBDB1)
Length = 205
Score = 92.3 bits (219), Expect = 1e-17
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVG---AENIDPSVVT 529
GKK+ T + D + + E P + VK ++ Y + +G A++I +V
Sbjct: 7 GKKIGMTQIFQEDGKA-QPVTLVEAGPCVVVQVKTEKQDGYEAVQLGYGKAKHITSAV-- 63
Query: 528 KDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGV 349
K C F +L + V +A+ G + + F+ G+ ID + RGF GV
Sbjct: 64 KGQCRGFGEFKVLREVD-----VDDIAAVSVGDQITVSDFKDGEKIDASGVSRGRGFSGV 118
Query: 348 MKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRID 169
+KRW F G P +HG + HR PG+IGS R++ G M GHMGN T+R + +L+ D
Sbjct: 119 VKRWHFAGGPKTHGQSDRHRAPGSIGSTTTPGRIYKGKHMAGHMGNEAVTIRNLVVLKTD 178
Query: 168 TKYNVIWTLGVAIPG 124
+ N++ G AIPG
Sbjct: 179 AEKNLLMVKG-AIPG 192
>UniRef50_A7APA8 Cluster: 50S ribosomal protein L3, putative; n=3;
Piroplasmida|Rep: 50S ribosomal protein L3, putative -
Babesia bovis
Length = 350
Score = 91.9 bits (218), Expect = 1e-17
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Frame = -1
Query: 564 VGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDI 385
+G NI+ +K G F G+ K H+ F S + LP G + HF G + +
Sbjct: 142 LGYRNINRQ--SKQNIGRFIKAGVGSKDHIAEFKCSSDCLLPVGHYMSVRHFTPGQWVFV 199
Query: 384 RSKTMDRGFQGVMKRWGFKGMPASHGV-TKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 208
+ +GFQG M+RW F G ASHG K H PG+I G VW GTKM GH G
Sbjct: 200 SGWSQPKGFQGAMRRWHFGGQNASHGTECKAHSAPGSIAQGKSAHIVWRGTKMGGHKGPD 259
Query: 207 WRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV-LPLKRNK 67
R + ++ RI+ N+I+ G +PG+ ++ + D + + +++N+
Sbjct: 260 PR-VTNCRVFRIEAHRNLIFLKG-TVPGDVMSVLKIRDALGICVRKNR 305
>UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32;
Bacteria|Rep: 50S ribosomal protein L3 - Clostridium
tetani
Length = 209
Score = 91.9 bits (218), Expect = 1e-17
Identities = 60/192 (31%), Positives = 92/192 (47%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+K+ T + +N V+ + E P K VEK Y I VG I +V K
Sbjct: 7 GRKLGMTQIFDENNRVVP-VTVVEAGPCTVVQKKSVEKDGYEAIQVGYGEIREKLVNKPL 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F+ G+ R L F + S G + F G+ ID+ + +G+QG++KR
Sbjct: 66 KGHFEKAGVGLSRMLREFKLENVSEYQVGQEIKVDIFEAGEKIDVTGTSKGKGYQGIIKR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
W P SHG +K HR G++G+ AR + +M GHMGN T+ +++++ +
Sbjct: 126 WNAHRGPMSHG-SKFHRAVGSMGAASYPARTFKNKRMAGHMGNVKSTVLNLEVVKTIPEK 184
Query: 159 NVIWTLGVAIPG 124
N+I G IPG
Sbjct: 185 NLILIKG-GIPG 195
>UniRef50_P60447 Cluster: 50S ribosomal protein L3; n=85;
Gammaproteobacteria|Rep: 50S ribosomal protein L3 -
Shigella flexneri
Length = 209
Score = 91.5 bits (217), Expect = 2e-17
Identities = 59/196 (30%), Positives = 92/196 (46%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
GKKV T + D I + E + + VK + Y I V + VTK
Sbjct: 6 GKKVGMTRIFTEDGVSIP-VTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPE 64
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F G+ R L F ++ G + F +D+ + +GF G +KR
Sbjct: 65 AGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKR 124
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
W F+ A+HG + +HR PG+IG +V+ G KM G MGN T++ + ++R+D +
Sbjct: 125 WNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAER 184
Query: 159 NVIWTLGVAIPGETGA 112
N++ G A+PG TG+
Sbjct: 185 NLLLVKG-AVPGATGS 199
>UniRef50_P94267 Cluster: 50S ribosomal protein L3; n=4; Borrelia
burgdorferi group|Rep: 50S ribosomal protein L3 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 206
Score = 91.5 bits (217), Expect = 2e-17
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 1/197 (0%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
GKKV T + N ++ + E++P K V++ Y ++ G+ ++ S V+K
Sbjct: 6 GKKVGMTQI-FQKNGIVVPVTVIEFQPNYIIGKKTVDRDGYSALIAGSVDLKSSKVSKPI 64
Query: 519 CGIFDSVGML-PKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMK 343
G + S+ + PKR++ + G + F+ +D+ T +GFQG MK
Sbjct: 65 KGQYKSLKDIEPKRYVIE--LKGLDGYDAGDEIKVDVFKSVKYVDVTGTTKGKGFQGAMK 122
Query: 342 RWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTK 163
R F G P+SHG +K HR G G AR + GTKM G M +T++ ++++ ID +
Sbjct: 123 RHNFSGGPSSHG-SKFHRHLGGTGQATTPARTFKGTKMAGRMAGNQQTIQNLEVVLIDEE 181
Query: 162 YNVIWTLGVAIPGETGA 112
+ G A+PG G+
Sbjct: 182 KRALLVKG-AVPGAKGS 197
>UniRef50_Q5GSU4 Cluster: 50S ribosomal protein L3; n=6;
Rickettsiales|Rep: 50S ribosomal protein L3 - Wolbachia
sp. subsp. Brugia malayi (strain TRS)
Length = 241
Score = 91.1 bits (216), Expect = 3e-17
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 1/187 (0%)
Frame = -1
Query: 606 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTP 427
+V+ +K Y +++G N + K +G+ + L +S S + G
Sbjct: 43 DVRRQDKCGYNSVILGIGNFKN--IAKPQLEYLKKMGISNRCKLYESRLSDLSGIECGKK 100
Query: 426 LYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV 247
+ HF VG +DI S ++ +GF GVMKR F G+ ASHGV+ HR G+ G + RV
Sbjct: 101 VGVNHFVVGQYLDITSYSIGKGFAGVMKRHNFCGLRASHGVSIAHRSQGSTGQCQDPGRV 160
Query: 246 WPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV-LPLKRN 70
+ G +M GH+G+ T++ ++IL ID + I G +PG + ++ D + PL ++
Sbjct: 161 FKGKRMAGHLGSSRVTVQNMEILSIDHGNSTIVVKGNNVPGFKNSYVFVKDAIKKPLHKD 220
Query: 69 KTAPPFP 49
PFP
Sbjct: 221 ---VPFP 224
>UniRef50_Q7XYP4 Cluster: 50S ribosomal protein L3, chloroplast
precursor; n=3; cellular organisms|Rep: 50S ribosomal
protein L3, chloroplast precursor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 302
Score = 91.1 bits (216), Expect = 3e-17
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Frame = -1
Query: 483 RHLCRFVVSPESALPNGTPLYATH-FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHG 307
+HL F ++ S G L A F VGD +D+ + +GFQG ++RWG K P SHG
Sbjct: 166 KHLKEFKIADVSEFTPGQQLKAEELFEVGDLVDVSGTSSGKGFQGSIRRWGMKRGPMSHG 225
Query: 306 VTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIP 127
+K+HR+ G+IG +RV+ G KM G MGN +T++ + ++ ++ + I G ++P
Sbjct: 226 -SKSHRQHGSIGCSATPSRVYKGLKMAGRMGNERKTVKKLPVMMVNDEEKYIVVRG-SVP 283
Query: 126 GETGAMCYLFDT 91
G+ G + L T
Sbjct: 284 GKKGTIVELRPT 295
>UniRef50_Q7V9W2 Cluster: 50S ribosomal protein L3; n=35; cellular
organisms|Rep: 50S ribosomal protein L3 -
Prochlorococcus marinus
Length = 219
Score = 89.8 bits (213), Expect = 6e-17
Identities = 46/157 (29%), Positives = 78/157 (49%)
Frame = -1
Query: 579 YGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVG 400
Y + + + ++ K + G G R++ + V G + F G
Sbjct: 46 YSAVQIAFGAVREKLINKPFQGHLAKSGDDLLRYMSEYRVKDVGEFQLGAQITVGDFEEG 105
Query: 399 DCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGH 220
+D+ +M RGF G KR GF P SHG +K HR PG+ G+G R++PG +M G
Sbjct: 106 QKVDVSGTSMGRGFSGYQKRHGFSRGPMSHG-SKNHREPGSTGAGTTPGRIYPGKRMAGR 164
Query: 219 MGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAM 109
G + T RG+ I+++D+ N++ G ++PG+ G++
Sbjct: 165 YGGKKITTRGLMIMKVDSDKNLLVIKG-SLPGKPGSL 200
>UniRef50_Q7WRC5 Cluster: 50S ribosomal protein L3; n=112;
Bacteria|Rep: 50S ribosomal protein L3 - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 233
Score = 89.8 bits (213), Expect = 6e-17
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 3/203 (1%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSV 535
++ +DG+ + T+L V +N V + VK +E Y I V +
Sbjct: 29 IFTEDGESIPVTVLDVSNNRV--------------TQVKSLESDGYAAIQVTYGTRRATR 74
Query: 534 VTKDYCGIFDSVGMLPKRHLCRFVVSPESALP---NGTPLYATHFRVGDCIDIRSKTMDR 364
V K G + G L F + P A + F G +D+ ++ +
Sbjct: 75 VVKPQAGHYAKAGAEAGSILKEFRLDPARAAEFAAGAVIAVESVFEAGQQVDVTGTSIGK 134
Query: 363 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVK 184
GF G +KR F ASHG +++HR PG+IG + R++PG +M GHMG+ RT++ +
Sbjct: 135 GFAGTIKRHNFGSQRASHGNSRSHRVPGSIGQAQDPGRIFPGKRMSGHMGDVTRTVQNLD 194
Query: 183 ILRIDTKYNVIWTLGVAIPGETG 115
++R+D + ++ G A+PG G
Sbjct: 195 VVRVDAERGLLMVKG-AVPGHAG 216
>UniRef50_Q6Q8Y8 Cluster: 50S ribosomal protein L3; n=1; uncultured
marine gamma proteobacterium EBAC20E09|Rep: 50S
ribosomal protein L3 - uncultured marine gamma
proteobacterium EBAC20E09
Length = 202
Score = 89.0 bits (211), Expect = 1e-16
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = -1
Query: 435 GTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 256
G + A F VG +DI + +G+ GV+KR F A+HG + HR G+IG
Sbjct: 82 GKHMTADVFEVGQFVDITGTSKGKGYAGVIKRHNFSMQDATHGNSLAHRAHGSIGQCQTP 141
Query: 255 ARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGA 112
RVW G KM GHMGN +T++ +KI+ +D + NV++ G A+PG G+
Sbjct: 142 GRVWKGKKMSGHMGNVQKTVQNLKIVELDVENNVVYVKG-AVPGFNGS 188
>UniRef50_Q85FW3 Cluster: Chloroplast 50S ribosomal protein L3; n=2;
Cyanidioschyzon merolae|Rep: Chloroplast 50S ribosomal
protein L3 - Cyanidioschyzon merolae (Red alga)
Length = 182
Score = 89.0 bits (211), Expect = 1e-16
Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Frame = -1
Query: 468 FVVSPESALPNGTPL-YATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTH 292
F V SA P G L +T F++G + +++KT+ +GF G KR F P SHG +K H
Sbjct: 62 FRVKHLSAYPIGRRLDLSTCFQIGQKVSVKAKTIGKGFAGYQKRHHFARGPMSHG-SKNH 120
Query: 291 RRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 115
R+PG+IG+G RV+PGT+M G +G + T++G++IL+I N L A+PG+ G
Sbjct: 121 RQPGSIGAGTFPGRVFPGTRMAGRLGGNFCTIKGLEILQIQ---NDQMALKGAVPGKVG 176
>UniRef50_Q7VQE8 Cluster: 50S ribosomal protein L3; n=38;
Bacteria|Rep: 50S ribosomal protein L3 - Blochmannia
floridanus
Length = 219
Score = 87.8 bits (208), Expect = 2e-16
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+K+ T + + + ++ + E P + VK EK Y + V N + K
Sbjct: 6 GRKLGMTRI-INEEGIMIAVTMIEILPHYVTQVKNKEKDGYCAVQVTTGNTRDKCLNKPK 64
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCI---DIRSKTMDRGFQGV 349
G +G+ + L F ++ + L + ++ +V CI D+ + +GF G
Sbjct: 65 LGHLKKLGINYGKGLWEFRLNDSNRLISVGDIFT--LKVLKCINKVDVTGISKGKGFAGA 122
Query: 348 MKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRID 169
+KRW F+ ASHG + +HR PG+IG +V+ G KM GH+G T++ + ++ ID
Sbjct: 123 VKRWNFRTQDASHGNSLSHRAPGSIGQNQTPGKVFKGKKMAGHLGYEKATIQNLAVINID 182
Query: 168 TKYNVIWTLGVAIPGETG 115
K N++ G AIPG G
Sbjct: 183 IKNNLLLVKG-AIPGVIG 199
>UniRef50_Q1NYY1 Cluster: 50S ribosomal protein L3; n=4;
Bacteria|Rep: 50S ribosomal protein L3 - Candidatus
Sulcia muelleri str. Hc (Homalodisca coagulata)
Length = 206
Score = 87.4 bits (207), Expect = 3e-16
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
Frame = -1
Query: 630 EYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPE 451
E P I +K EK Y +G + K F PK+ + F + +
Sbjct: 28 EAGPCIVLQIKTKEKDGYDSCQLGFDEKKYKNTNKPLLFFFKKFKSTPKKKI--FELPIK 85
Query: 450 SALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGM-PASHGVTKTHRRPGNI 274
+ +G + F + ++I + +GFQGV+KR GF G+ SHG R PG+I
Sbjct: 86 GNIKSGNIIKLNCFHENELVNITGFSKGKGFQGVVKRHGFSGVGERSHGQHNRSRAPGSI 145
Query: 273 GSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPG 124
G+G + +RV+ GT+M G MGN+ TL+ KIL+ID N + G ++PG
Sbjct: 146 GAGSDPSRVFKGTRMAGRMGNKKVTLKNRKILKIDLLNNFLIIKG-SVPG 194
>UniRef50_A6CGN0 Cluster: 50S ribosomal protein L3; n=2;
Bacteria|Rep: 50S ribosomal protein L3 - Planctomyces
maris DSM 8797
Length = 229
Score = 87.0 bits (206), Expect = 4e-16
Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Frame = -1
Query: 513 IFDSVGMLPKRHLCRFVVSPES-ALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRW 337
+ D G PKR + F E G L + F ID+ + RGF GVMKR
Sbjct: 86 VVDKAGCEPKRFVKEFRTDGEDHGCEVGGELTVSVFADVPFIDVIGTSKGRGFAGVMKRH 145
Query: 336 GFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYN 157
F G A+HGV + HR G+IG + +RV GT+M G G + T+R +K++R+D +
Sbjct: 146 NFSGQRATHGVKRVHRHGGSIGMSADPSRVLKGTRMGGRYGGKQITVRHLKVVRVDEENG 205
Query: 156 VIWTLGVAIPGETG 115
V+ G A+PG G
Sbjct: 206 VLLVRG-AVPGPNG 218
>UniRef50_Q5P332 Cluster: 50S ribosomal protein L3; n=9;
Bacteria|Rep: 50S ribosomal protein L3 - Azoarcus sp.
(strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 214
Score = 86.6 bits (205), Expect = 5e-16
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 2/202 (0%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSV 535
++ +DG+ V T+L V +N V + +K E Y + V S
Sbjct: 15 IFAEDGRSVPVTVLDVSNNRV--------------TQIKTPESDGYAAVQVTFGKRRASR 60
Query: 534 VTKDYCGIFDSVGMLPKRHLCRFVVSPE--SALPNGTPLYATHFRVGDCIDIRSKTMDRG 361
V K G G+ L F V E + G + F VG +D+ ++ +G
Sbjct: 61 VGKPLAGHLAKAGVEAGHMLKEFRVETEQVAGFKAGDVVGVDLFAVGQKVDVTGTSIGKG 120
Query: 360 FQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKI 181
F GV KR F ASHG + +H PG+IG + RV+PG +M G GN T +G+++
Sbjct: 121 FSGVGKRHNFSSNRASHGNSVSHNAPGSIGMAQDPGRVFPGKRMAGQYGNTTCTTQGLEV 180
Query: 180 LRIDTKYNVIWTLGVAIPGETG 115
+R+D + ++ G A+PG G
Sbjct: 181 VRVDVERQLLLVKG-AVPGSKG 201
>UniRef50_Q9Z7Q7 Cluster: 50S ribosomal protein L3; n=9;
Chlamydiaceae|Rep: 50S ribosomal protein L3 - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 219
Score = 85.4 bits (202), Expect = 1e-15
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Frame = -1
Query: 624 KPMIKSNVKWVEKQKYGCILVGAENIDPSV------VTKDYCGIFDSVGMLPKRHLCRFV 463
+P + + +K E Y + +GAE ++ V+K G G R L + V
Sbjct: 33 EPNVVTQIKTKESDGYFSLQIGAEEMNAPAHTITKRVSKPKLGHLRKAGGRVFRFL-KEV 91
Query: 462 VSPESALPNGTPLYATH----FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKT 295
E AL NG L F +D+R + +GFQGVMK++GF+G P SHG +
Sbjct: 92 RGSEEAL-NGVSLGDAFGLEVFEDVSSVDVRGISKGKGFQGVMKKFGFRGGPGSHG-SGF 149
Query: 294 HRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 115
HR G+IG R +PG+K P HMG T++ ++++++D + V+ G AIPG G
Sbjct: 150 HRHAGSIGMRSTPGRCFPGSKRPSHMGAENVTVKNLEVIKVDLEKKVLLVKG-AIPGARG 208
Query: 114 AM 109
++
Sbjct: 209 SI 210
>UniRef50_P75580 Cluster: 50S ribosomal protein L3; n=4;
Mycoplasma|Rep: 50S ribosomal protein L3 - Mycoplasma
pneumoniae
Length = 287
Score = 84.6 bits (200), Expect = 2e-15
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Frame = -1
Query: 624 KPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESA 445
+P + VK K KY L+ + ++ + K G F+ + P +HL + +
Sbjct: 32 EPNQVAGVKTEAKDKYSATLLSFDTVENKKLNKPQQGFFEKNNLKPTKHLQE--IRNMTG 89
Query: 444 LPNGTPLYATH-FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNI-- 274
G + + F+VG+ +D+ + + RGF G +KRW FK P HG HR G++
Sbjct: 90 FEMGQQITPQNLFQVGEYVDVSAISKGRGFTGAIKRWNFKIGPLGHGAGYPHRFQGSVQA 149
Query: 273 GSGGEKA-RVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAM 109
G GG A RV+ G KM GH G+ T++ ++I+ D + N++ + AI G G +
Sbjct: 150 GRGGASAQRVFKGKKMSGHYGHEKVTVQNLRIVGFD-EANMLVLVSGAIAGPEGGV 204
>UniRef50_Q8EUB3 Cluster: 50S ribosomal protein L3; n=6;
Firmicutes|Rep: 50S ribosomal protein L3 - Mycoplasma
penetrans
Length = 310
Score = 82.6 bits (195), Expect = 9e-15
Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 3/187 (1%)
Frame = -1
Query: 624 KPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESA 445
+P + K EK Y VG + I+ + K G F + +H F S
Sbjct: 30 EPNVVLENKTQEKNGYVATKVGFQQIEEKKLNKPQKGYFKKIKTDAFKHTKEF--RNVSG 87
Query: 444 LPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNI--G 271
G + F GD +D ++ T +GF G +KRW FK P HG HR G+I G
Sbjct: 88 YNVGDKILVDIFNSGDKVDAQAITKGKGFTGAIKRWNFKVGPLGHGAGYPHRYQGSISFG 147
Query: 270 SGGEKA-RVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFD 94
GG + RV G KM GH G+ T+ + ++ I+ + N+I G ++PG ++ L
Sbjct: 148 RGGSQGQRVPKGQKMSGHYGHELVTISNLTVVSIELEKNLILVKG-SVPGPVNSLVLLKT 206
Query: 93 TVLPLKR 73
TV K+
Sbjct: 207 TVKSKKQ 213
>UniRef50_A6G3Z5 Cluster: 50S ribosomal protein L3; n=1;
Plesiocystis pacifica SIR-1|Rep: 50S ribosomal protein
L3 - Plesiocystis pacifica SIR-1
Length = 223
Score = 81.4 bits (192), Expect = 2e-14
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Frame = -1
Query: 594 VEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN--GTPLY 421
VE+ Y + + ++ S ++K G F + PKR + F V+ + + G+ +
Sbjct: 43 VERDGYTALQLAFDDQKASRLSKPKLGQFKKAEVSPKRKIKEFRVAADVVAQHAVGSEVD 102
Query: 420 ATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWP 241
+ F G +D+ + +GFQGVMKR G +G +HG + +R G+IG RV P
Sbjct: 103 VSIFSDGQLVDVTGTSKGKGFQGVMKRHGMRGEKRTHGQHEVYRHGGSIGCRLTPGRVIP 162
Query: 240 GTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPG 124
G +M G MGN T++ +++ ++ +I G AIPG
Sbjct: 163 GKRMAGQMGNETVTVQNLEVAKVIADKGLILVKG-AIPG 200
>UniRef50_O83219 Cluster: 50S ribosomal protein L3; n=2;
Treponema|Rep: 50S ribosomal protein L3 - Treponema
pallidum
Length = 208
Score = 81.4 bits (192), Expect = 2e-14
Identities = 53/168 (31%), Positives = 81/168 (48%)
Frame = -1
Query: 603 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPL 424
+K VE+ Y +++G + S ++K Y G F +P + R + G L
Sbjct: 37 LKDVERFGYSAVILGTGCMKKSRISKPYAGQFAE--RIPPVRVMREFRGFTLDVSVGQVL 94
Query: 423 YATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVW 244
+D+ + + +GFQGV+KRWGF G +SHG +K HR G+ G R +
Sbjct: 95 DVRVLESVRYLDVCALSKGKGFQGVVKRWGFSGGRSSHG-SKFHREAGSTGQCTSPGRTF 153
Query: 243 PGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYL 100
KMPG MG T++ ++I RID V+ G A+PG A +L
Sbjct: 154 KNVKMPGRMGAERVTVQNLRIERIDVGLGVVMVRG-AVPGRNKATVFL 200
>UniRef50_Q7UN20 Cluster: 50S ribosomal protein L3; n=2;
Planctomycetaceae|Rep: 50S ribosomal protein L3 -
Rhodopirellula baltica
Length = 228
Score = 81.4 bits (192), Expect = 2e-14
Identities = 46/133 (34%), Positives = 66/133 (49%)
Frame = -1
Query: 489 PKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASH 310
P+R + F S E+ + G L F +DI + RGF GVMKR F G A+H
Sbjct: 95 PQRFVREFRGSSEANV--GDTLTVEQFNDVKKVDITGTSKGRGFAGVMKRHNFAGQRATH 152
Query: 309 GVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAI 130
GV K HR G G +R + G +M G GN T R ++++R+D + N++ G A+
Sbjct: 153 GVKKCHRHAGGTGMSASPSRTFKGKRMAGQYGNAKVTTRNLEVVRVDAENNLLMIRG-AV 211
Query: 129 PGETGAMCYLFDT 91
PG G + T
Sbjct: 212 PGPNGGFVSIRQT 224
>UniRef50_Q81VT0 Cluster: 50S ribosomal protein L3; n=9;
Bacteria|Rep: 50S ribosomal protein L3 - Bacillus
anthracis
Length = 210
Score = 81.0 bits (191), Expect = 3e-14
Identities = 54/192 (28%), Positives = 90/192 (46%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+K+ T + + +I + P + K E Y I +G E+ + K
Sbjct: 7 GRKIGMTQVFAENGELIP-VTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREKLTNKPE 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G PKR + + L G + F G+ +D+ + +GFQGV+KR
Sbjct: 66 QGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVDVFATGEIVDVTGISKGKGFQGVIKR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
G P SHG ++ HRRPG++G RV+ G K+ G MG T++ ++I+++DT+
Sbjct: 126 HGQSRGPMSHG-SRYHRRPGSMGPVAPN-RVFKGKKLAGRMGGDQVTIQNLEIVQVDTER 183
Query: 159 NVIWTLGVAIPG 124
N++ G +PG
Sbjct: 184 NLLLVKG-NVPG 194
>UniRef50_A6GV22 Cluster: 50S ribosomal protein L3; n=2; cellular
organisms|Rep: 50S ribosomal protein L3 - Limnobacter
sp. MED105
Length = 126
Score = 80.2 bits (189), Expect = 5e-14
Identities = 38/107 (35%), Positives = 60/107 (56%)
Frame = -1
Query: 435 GTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 256
G + A F G +D+ T +GF G +KR F ASHG + +H PG+IG +
Sbjct: 8 GAAVSAEIFAPGQKVDVSGVTQGKGFSGAIKRHHFSSQRASHGNSISHNAPGSIGMAQDP 67
Query: 255 ARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 115
RV+PG +M G +GN RT + ++++R+D + ++ G A+PG G
Sbjct: 68 GRVFPGKRMAGQLGNVNRTTQNLEVVRVDAERGLLLIKG-AVPGSKG 113
>UniRef50_A5K6P7 Cluster: 50S ribosomal protein L3, putative; n=5;
Plasmodium|Rep: 50S ribosomal protein L3, putative -
Plasmodium vivax
Length = 316
Score = 79.4 bits (187), Expect = 8e-14
Identities = 40/120 (33%), Positives = 67/120 (55%)
Frame = -1
Query: 483 RHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGV 304
++ C ++P G + ++ +++R + +GF GV+KRWGF+ P +HG
Sbjct: 165 KNTCSLTLTPPQNFVLGQIIDVSYLYNYKYVNVRGLSKGKGFCGVIKRWGFRRGPMTHG- 223
Query: 303 TKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPG 124
+ HR+PG+IG+ RV G KMPG GN++ T+ +K+L ++ + N I G IPG
Sbjct: 224 SSHHRKPGSIGASTHIGRVLKGKKMPGKHGNKYNTMINLKLLGLNLERNEILVSG-CIPG 282
>UniRef50_Q8KTP2 Cluster: 50S ribosomal protein L3; n=1; Candidatus
Tremblaya princeps|Rep: 50S ribosomal protein L3 -
Tremblaya princeps
Length = 205
Score = 78.2 bits (184), Expect = 2e-13
Identities = 39/109 (35%), Positives = 59/109 (54%)
Frame = -1
Query: 435 GTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 256
G P R G + I+++++ +GF GVMKR GF ASHG +K HR G+ G +
Sbjct: 95 GRPHAKAILRAGQLVSIKARSVGKGFSGVMKRHGFSSGRASHGTSKAHRTLGSTGMSQDP 154
Query: 255 ARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAM 109
RV+PG +MPG MG T R + + + ++ + G IPG G++
Sbjct: 155 GRVFPGKRMPGRMGCEHATARNLMVEHV--AHDFVMVRG-GIPGHAGSI 200
>UniRef50_Q4UBR8 Cluster: 50S ribosomal protein L3, putative; n=2;
Theileria|Rep: 50S ribosomal protein L3, putative -
Theileria annulata
Length = 328
Score = 77.8 bits (183), Expect = 2e-13
Identities = 42/98 (42%), Positives = 59/98 (60%)
Frame = -1
Query: 375 TMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTL 196
T +GFQGV+KR GFK P SHG +K HRRPG+IG+ V PG KMPG MG + T
Sbjct: 226 TKGKGFQGVIKRHGFKRGPMSHG-SKHHRRPGSIGASTTPGCVKPGKKMPGRMGGKRCTF 284
Query: 195 RGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLP 82
R +KIL ++ + ++++ G + G G+ + V P
Sbjct: 285 RKLKILGLNPETSLLYVKG-HVAGPKGSYVTVTSDVQP 321
>UniRef50_Q8Y440 Cluster: 50S ribosomal protein L3; n=19;
Bacteria|Rep: 50S ribosomal protein L3 - Listeria
monocytogenes
Length = 209
Score = 77.8 bits (183), Expect = 2e-13
Identities = 56/197 (28%), Positives = 90/197 (45%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+KV T + + +I E + ++ K VE Y + +G E+ + K
Sbjct: 7 GRKVGMTQVFTENGELIPVTVIEAAQNVVLQK-KTVETDGYEAVQIGFEDKRAILSNKPE 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G PKR + F G + F GD ID + +GFQGV+KR
Sbjct: 66 QGHVAKANTTPKRFIREFRDVNLDEYEIGAEVKVDVFAEGDIIDATGVSKGKGFQGVIKR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
G P +HG ++ HRRPG++G RV+ +PG MG T++ ++I+++D +
Sbjct: 126 HGQSRGPMAHG-SRYHRRPGSMGPVAPN-RVFKNKLLPGRMGGEQITIQNLEIVKVDVEK 183
Query: 159 NVIWTLGVAIPGETGAM 109
NV+ G +PG A+
Sbjct: 184 NVLLVKG-NVPGAKKAL 199
>UniRef50_Q5FM90 Cluster: 50S ribosomal protein L3; n=31;
Bacteria|Rep: 50S ribosomal protein L3 - Lactobacillus
acidophilus
Length = 212
Score = 76.6 bits (180), Expect = 6e-13
Identities = 56/211 (26%), Positives = 96/211 (45%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+KV T + D ++ + E P + VK VE Y + +G ++ + K
Sbjct: 7 GRKVGMTQIFTKDGILVP-VTVVEATPNVVMQVKTVESDGYEAVQLGYQDKREVLSNKPE 65
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G D PKR + G+ + F+ GD +++ + G+QG +KR
Sbjct: 66 KGHADKAKTSPKRFIREIRGVELKDYEVGSEVTVDTFKEGDVVNVTGTSRGHGYQGNIKR 125
Query: 339 WGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKY 160
WG P +HG ++ HR PG++GS RV G ++PGHMG + T+ + I ++
Sbjct: 126 WGQSRGPETHG-SRYHRIPGSMGS--IINRVPKGKRLPGHMGVKKVTIENLVIEKVVADK 182
Query: 159 NVIWTLGVAIPGETGAMCYLFDTVLPLKRNK 67
NV+ G +PG ++ + +K +K
Sbjct: 183 NVLMIKG-NVPGAKNSLIVVKTASKAVKADK 212
>UniRef50_Q2IJD0 Cluster: 50S ribosomal protein L3; n=2;
Anaeromyxobacter|Rep: 50S ribosomal protein L3 -
Anaeromyxobacter dehalogenans (strain 2CP-C)
Length = 236
Score = 75.4 bits (177), Expect = 1e-12
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 8/175 (4%)
Frame = -1
Query: 600 KWVEKQKYGCILVGAENIDPSV---VTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN-- 436
K EK Y +++G +D ++K G+F G RH+ V L +
Sbjct: 39 KTAEKDGYDAVVIGFGVVDEKHAHRLSKPEVGVFKKAGTPIFRHVKEIRVKDAKLLGDLK 98
Query: 435 -GTPLYATH-FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPA-SHGVTKTHRRPGNIGSG 265
G L F+ ID+ T RGF GVMKRW KG S + HR G IG
Sbjct: 99 AGDVLTVDKVFKANQRIDVAGVTKGRGFTGVMKRWNMKGAARDSSTAHEHHRHVGAIGQR 158
Query: 264 GEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYL 100
+VW G +PGH G T++ + ++ I+ + NV+ G A+PG + ++
Sbjct: 159 KTPGKVWKGKHLPGHYGVDNITIQNLTVVGIEPEQNVLLVSG-AVPGHADGLLFV 212
>UniRef50_Q1ISC2 Cluster: 50S ribosomal protein L3; n=5;
Bacteria|Rep: 50S ribosomal protein L3 - Acidobacteria
bacterium (strain Ellin345)
Length = 244
Score = 72.1 bits (169), Expect = 1e-11
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHV-IKYIPPEEYKPMIKSNVKWVEKQKYGCILVG-AENIDPSVVTK 526
GKK+ T Q+ D+ ++ + + P + + K K Y VG E + + +TK
Sbjct: 7 GKKIGMT--QLFDSKGDVRPVTVLQAGPCVITQRKTANKDGYDAAQVGLVEFVKETRLTK 64
Query: 525 DYCGIFDSVGMLPKRHLCRFVV---SPESALPNGT-----PLYATHFRVGDCIDIRSKTM 370
G + P R L F + P A NG + F +D+ +
Sbjct: 65 AQLGHLGKNDLPPVRTLHEFAIVADGPSEAESNGEVKVGDKVLVDLFEGSKFVDVTGVSK 124
Query: 369 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRG 190
RGF GV+KR F G SHG + G+IGS +RV+ G +M GHMG T+R
Sbjct: 125 GRGFAGVVKRHKFAGGARSHG--SMFQISGSIGSSAFPSRVFKGMRMAGHMGQDQVTVRN 182
Query: 189 VKILRIDTKYNVIWTLGVAIPGETGAMCYL 100
++IL ID N++ G A+PG A ++
Sbjct: 183 LRILGIDKDENLLVVEG-AVPGPKDATVFI 211
>UniRef50_Q9TLT2 Cluster: Chloroplast 50S ribosomal protein L3; n=1;
Cyanidium caldarium|Rep: Chloroplast 50S ribosomal
protein L3 - Cyanidium caldarium
Length = 215
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/93 (36%), Positives = 58/93 (62%)
Frame = -1
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
+ + + T+ +GF G K+ F SHG +K+HRRPG+IG+G RV+PG KM G +G
Sbjct: 110 VQVSAYTIGKGFAGYQKKHKFSRGAMSHG-SKSHRRPGSIGAGTTPGRVFPGVKMAGRLG 168
Query: 213 NRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 115
R+++ + +L++D N ++ L ++PG+ G
Sbjct: 169 FSRRSIKNLLVLKVDLT-NKLFLLKGSVPGKYG 200
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 71.3 bits (167), Expect = 2e-11
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 4/204 (1%)
Frame = -1
Query: 699 GKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDY 520
G+K+ T + + + + E KP + ++ K Y + +GA + K
Sbjct: 6 GQKIGMTQIYTAQGNKVP-VTVIEVKPNVVTHKFENTKDGYVALQLGAFDQKERKFKKPE 64
Query: 519 CGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
G F PKR + + G + A F+ G+ +D+ + +GF G +KR
Sbjct: 65 IGHFKKSNTTPKRFVKE--IRNMDGYNLGDLVKADIFKSGELVDVTGISKGKGFAGTIKR 122
Query: 339 WGFKGMPASHGV---TKTHRRPGNIGS-GGEKARVWPGTKMPGHMGNRWRTLRGVKILRI 172
K P SHG +K R+ G+IG G K V G MPGH+GN RT++ ++++++
Sbjct: 123 HNQKIGPKSHGGGGGSKPVRQTGSIGDIAGNK--VLKGMTMPGHLGNVQRTIQNLEVVKV 180
Query: 171 DTKYNVIWTLGVAIPGETGAMCYL 100
D K N++ G ++PG C+L
Sbjct: 181 DIKNNILLVKG-SVPGPKN--CFL 201
>UniRef50_A7AWX6 Cluster: Ribosomal protein L3 domain containing
protein; n=1; Babesia bovis|Rep: Ribosomal protein L3
domain containing protein - Babesia bovis
Length = 323
Score = 70.1 bits (164), Expect = 5e-11
Identities = 35/94 (37%), Positives = 57/94 (60%)
Frame = -1
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
+ + T +GF GV+KR GF P SHG +K HR+PG+IG+ V PG +MPG MG
Sbjct: 214 VKVTGITKGKGFAGVIKRHGFARGPMSHG-SKHHRKPGSIGASTTPGCVKPGKRMPGRMG 272
Query: 213 NRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGA 112
N+ T R +++L I+ + ++++ + + G G+
Sbjct: 273 NKRCTFRKLRVLGINPETSLMYVKAL-VAGANGS 305
>UniRef50_Q7M8D4 Cluster: 50S ribosomal protein L3; n=23;
Epsilonproteobacteria|Rep: 50S ribosomal protein L3 -
Wolinella succinogenes
Length = 192
Score = 69.7 bits (163), Expect = 7e-11
Identities = 41/94 (43%), Positives = 54/94 (57%)
Frame = -1
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
+ + +T RGF GVMKRW F G PA+HG + RR G+IG+ RV PG KM G G
Sbjct: 94 VKVSLQTKGRGFTGVMKRWNFAGGPAAHG-HRFKRRTGSIGNREWPGRVQPGKKMAGQYG 152
Query: 213 NRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGA 112
N T++ +I+ D + N I L +IPG GA
Sbjct: 153 NEKVTVQN-EIVSFDAE-NKILVLKGSIPGFNGA 184
>UniRef50_Q8I4X7 Cluster: 50S ribosomal protein L3, putative; n=7;
Plasmodium|Rep: 50S ribosomal protein L3, putative -
Plasmodium falciparum (isolate 3D7)
Length = 341
Score = 61.3 bits (142), Expect = 2e-08
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Frame = -1
Query: 606 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIF--DSVGMLPKRHLCRFVVSPESALPNG 433
N K + K Y + +G N++ +K+ G F +G + K + F + + LP
Sbjct: 115 NQKTISKNGYEALELGVGNMNVIKQSKNNIGNFIKRKLGFIHK--IKEFKCTSDCFLPIH 172
Query: 432 TPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGV-TKTHRRPGNIGSGGEK 256
HF G + I S ++GF G MK+W F G SHG +K HR G++ G
Sbjct: 173 HKFSCRHFSPGQNLFISSGIKNKGFCGAMKKWNFSGKNKSHGTESKAHRSLGSVSMGKTI 232
Query: 255 ARVWPGTKMPGHMGNRWRT-LRGVKILRIDTKYNVIWTLG 139
V+ KM H+G + K+ RI++ N+++ G
Sbjct: 233 NIVFRNKKMNTHIGEKSLVKCSNNKLFRINSLKNLLFIKG 272
>UniRef50_A5KRQ1 Cluster: 50S ribosomal protein L3; n=1; candidate
division TM7 genomosp. GTL1|Rep: 50S ribosomal protein
L3 - candidate division TM7 genomosp. GTL1
Length = 180
Score = 60.9 bits (141), Expect = 3e-08
Identities = 44/166 (26%), Positives = 77/166 (46%)
Frame = -1
Query: 621 PMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESAL 442
P + VK +K Y + +G + ++ G + + PK + V+ +
Sbjct: 8 PCAVTQVKTADKDGYNAVQIGYG--EGKNLSNAVAGHVKAAKVTPKV-IREIRVNELDEI 64
Query: 441 PNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 262
G L F VGD +D+ + +GF G +KR F +HG R+ G+IGS
Sbjct: 65 KVGDQLGVDLFIVGDNVDVTGTSKGKGFAGTVKRHNFNTSKKTHGGNGYVRKVGSIGSMY 124
Query: 261 EKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPG 124
+ +++ G +M G MG+ T++ + + ID + N+I G A+PG
Sbjct: 125 PQ-KIFKGKRMAGRMGHETVTVKNLSVAYIDAESNLIGLKG-AVPG 168
>UniRef50_A6QCP8 Cluster: 50S ribosomal protein L3; n=2;
Epsilonproteobacteria|Rep: 50S ribosomal protein L3 -
Sulfurovum sp. (strain NBC37-1)
Length = 193
Score = 59.3 bits (137), Expect = 9e-08
Identities = 38/88 (43%), Positives = 47/88 (53%)
Frame = -1
Query: 375 TMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTL 196
T RGF G MKR F G P SHG + RR G+IG+ RV G KMPG GN T+
Sbjct: 101 TKGRGFSGGMKRHNFGGGPGSHG-HRFGRRIGSIGNAEWPGRVQKGKKMPGQYGNTKVTV 159
Query: 195 RGVKILRIDTKYNVIWTLGVAIPGETGA 112
+ ++ D + N I L +IPG GA
Sbjct: 160 KN-DVVSFDAE-NGILVLKGSIPGHNGA 185
>UniRef50_Q9AIN8 Cluster: 50S ribosomal protein L3; n=4; Candidatus
Carsonella ruddii|Rep: 50S ribosomal protein L3 -
Carsonella ruddii
Length = 136
Score = 56.8 bits (131), Expect = 5e-07
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = -1
Query: 366 RGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 208
+GFQGV+KRW FK SHG + ++R G+ G + RV+ KMPG MGN+
Sbjct: 49 KGFQGVVKRWNFKTKDKSHGNSLSYRTLGSTGQCQDPGRVFKKKKMPGRMGNK 101
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 56.0 bits (129), Expect = 9e-07
Identities = 30/80 (37%), Positives = 45/80 (56%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F+ GD ID+ + T +GFQG +KR+G + MP H K H R G++G +K + T
Sbjct: 188 FKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHRKGHSRIGSVGP--QKPAIMFYTP 245
Query: 231 MPGHMGNRWRTLRGVKILRI 172
PG +G RT +IL++
Sbjct: 246 FPGQLGFHQRTEYNKRILKV 265
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 54.0 bits (124), Expect = 4e-06
Identities = 30/80 (37%), Positives = 39/80 (48%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F+ G+ +D T +GFQG +KRWG K H R G+IG K +W
Sbjct: 190 FQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMW-SVP 248
Query: 231 MPGHMGNRWRTLRGVKILRI 172
MPG MG RT +IL+I
Sbjct: 249 MPGQMGYHQRTEYNKRILKI 268
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 52.0 bits (119), Expect = 1e-05
Identities = 33/86 (38%), Positives = 44/86 (51%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F+ G +D+ + T +GFQGV+KR F H K R+ G IGS G R++P
Sbjct: 183 FKEGQYVDVIAVTKGKGFQGVIKR--FHVHRRQHKSEKGVRKVGAIGSRG-PGRIFPTVP 239
Query: 231 MPGHMGNRWRTLRGVKILRIDTKYNV 154
MPG MG RT I++I NV
Sbjct: 240 MPGQMGYHRRTEYNKLIIKIGEPLNV 265
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 51.6 bits (118), Expect = 2e-05
Identities = 31/81 (38%), Positives = 40/81 (49%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F G +D+ + T +GFQGV+KRWG K +P H K RR G G ++ W T
Sbjct: 197 FEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRRIGARSHG--RSTFWE-TP 253
Query: 231 MPGHMGNRWRTLRGVKILRID 169
G G RT +IL ID
Sbjct: 254 QAGQTGFHRRTEYNKRILMID 274
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 50.4 bits (115), Expect = 4e-05
Identities = 32/80 (40%), Positives = 40/80 (50%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
FR G IDI T +GFQGV+KR+G K +P H K R+ IGS T
Sbjct: 251 FREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETP 307
Query: 231 MPGHMGNRWRTLRGVKILRI 172
PG MG RT +I++I
Sbjct: 308 QPGQMGFHRRTEYNKRIIKI 327
>UniRef50_P53307 Cluster: Uncharacterized protein YGR219W; n=1;
Saccharomyces cerevisiae|Rep: Uncharacterized protein
YGR219W - Saccharomyces cerevisiae (Baker's yeast)
Length = 113
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 148 PNNIIFCINTENLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMRSRHT 327
PNNIIF ++ +N N + V+H++RH S + T T SM +MR T
Sbjct: 37 PNNIIFIVDFQNFNILDSNMLVSHMTRHLSSWQYPTWVLVLTIRTTVSMHNRCTMRCSQT 96
Query: 328 LKTPPLHHSLKT 363
L++ P HH+ KT
Sbjct: 97 LESIPFHHTSKT 108
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 44.0 bits (99), Expect = 0.004
Identities = 28/77 (36%), Positives = 37/77 (48%)
Frame = -1
Query: 402 GDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPG 223
G +D+ T +GFQGV+KR+G K +P H K RR G G + P PG
Sbjct: 217 GKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHRKGSRRVGARSWGKGTSSYVP---QPG 273
Query: 222 HMGNRWRTLRGVKILRI 172
MG RT ++L I
Sbjct: 274 QMGYHRRTDYNKRVLMI 290
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 43.6 bits (98), Expect = 0.005
Identities = 29/80 (36%), Positives = 42/80 (52%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
+ G +D+ T +G+QGV+KR+G K + SH +K R+ GN+G G V +
Sbjct: 215 YEAGKELDVVGITKGKGWQGVIKRFGVKLL--SHKNSKRRRQIGNMGDFG-TGYVRKTIR 271
Query: 231 MPGHMGNRWRTLRGVKILRI 172
G MG RT +ILRI
Sbjct: 272 QAGQMGYHKRTELNKRILRI 291
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 42.7 bits (96), Expect = 0.009
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 238
F G+ +D+ + T +GFQGV+KRW G+ T+ ++ +IGS G +RV
Sbjct: 196 FDEGEIVDVSAITKGKGFQGVVKRW---GVTIQDRKTQRKQKGRHIGSIGPITPSRVRWT 252
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
M G +G RT +IL+I
Sbjct: 253 VPMAGQVGYHQRTEHNKRILKI 274
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 41.9 bits (94), Expect = 0.015
Identities = 26/89 (29%), Positives = 37/89 (41%)
Frame = -1
Query: 435 GTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 256
G + FR G+ D T +G QG +KRWG + H RR GN+G
Sbjct: 184 GVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGP-WNP 242
Query: 255 ARVWPGTKMPGHMGNRWRTLRGVKILRID 169
+RV G G RT +++ I+
Sbjct: 243 SRVRSTVPQQGQTGYHQRTELNKRLIDIN 271
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 41.5 bits (93), Expect = 0.020
Identities = 26/80 (32%), Positives = 38/80 (47%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F+ G ID+ T +GF GV+KR+ +P H K R+ IG+ G T
Sbjct: 209 FKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRK---IGTRGPSLGTPSYTP 265
Query: 231 MPGHMGNRWRTLRGVKILRI 172
PG +G RT +I++I
Sbjct: 266 QPGQLGFHRRTEYNKRIIKI 285
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 41.1 bits (92), Expect = 0.027
Identities = 26/91 (28%), Positives = 37/91 (40%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F G+ +D+ + T G QG + RWG H T R GN+G W +
Sbjct: 193 FAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQ 252
Query: 231 MPGHMGNRWRTLRGVKILRIDTKYNVIWTLG 139
+ G G RT +IL++ K I G
Sbjct: 253 L-GQTGYHQRTEYNKRILKMGDKAEEITPAG 282
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 39.9 bits (89), Expect = 0.061
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -1
Query: 402 GDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMP- 226
G +D+ S T +GF G ++R+G K +P + + HRR IG+ G W +P
Sbjct: 189 GKFVDVLSVTKGKGFTGHVQRFGVKLLPRKN---RKHRR--MIGTLGPWHPDWVRNTVPQ 243
Query: 225 -GHMGNRWRTLRGVKILR 175
G MG + RT+ V++L+
Sbjct: 244 AGQMGYQQRTISNVRVLK 261
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 39.5 bits (88), Expect = 0.081
Identities = 29/80 (36%), Positives = 39/80 (48%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 232
F G ID+ T G QGV++R+G K + SH +K R+ GN+G G V +
Sbjct: 195 FESGSDIDVIGVTKGYGNQGVVRRFGVKLL--SHKNSKRRRQIGNMGDFG-TGYVRKTIR 251
Query: 231 MPGHMGNRWRTLRGVKILRI 172
G G RT +ILRI
Sbjct: 252 QAGQTGYHQRTEYNKRILRI 271
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 38.3 bits (85), Expect = 0.19
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIG 271
F G +D+ + T +G+QGV+KRW K H KT R G++G
Sbjct: 191 FETGASVDVAAITKGKGWQGVLKRWNVK--KKQHKSRKTVREVGSLG 235
>UniRef50_A3XPQ6 Cluster: Putative outer membrane protein, probably
involved in nutrient binding; n=1; Leeuwenhoekiella
blandensis MED217|Rep: Putative outer membrane protein,
probably involved in nutrient binding - Leeuwenhoekiella
blandensis MED217
Length = 1057
Score = 35.5 bits (78), Expect = 1.3
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Frame = -1
Query: 621 PMIKSNVKWVEK--QKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPES 448
P++ NV W+E+ + YG N++ + Y + S+G + L F P
Sbjct: 317 PLLYPNVNWMEEVFKSYGRNRQALINVNGGAESARY---YVSLGYYNETGL--FQTDPNV 371
Query: 447 ALPNGTPLYATHFRVGDCIDIRSKT-MDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNI- 274
+ +GT +F ID+ T ++ G QG + + G P S G+T + G
Sbjct: 372 SYDSGTGFERFNFTSNLTIDLTKTTDINVGIQGYLSDGNYPGTPTSPGITLEDQIFGTAL 431
Query: 273 -GSGGEKARVWPGTKMPGHMGN 211
E ++PG +PG N
Sbjct: 432 EAPPVEYPVLYPGGFVPGKSAN 453
>UniRef50_Q5AG30 Cluster: Putative uncharacterized protein; n=3;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 814
Score = 35.5 bits (78), Expect = 1.3
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +1
Query: 139 TQCPNNIIFCINTENLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSM--SFGDSM 312
+Q PNN + N SPSV H S + F+TR + ++ S S
Sbjct: 119 SQLPNNSSSSLFINNRTRQPNSPSVNSQRGHSKSPSKNSHFSTRDEPIKENLKPSSESSS 178
Query: 313 RSRHTLKTP--PLHHSLKTSIHSFRSNVNTIPNSKM 414
S H+L++P PL K S S ++ P+S M
Sbjct: 179 ASTHSLESPITPLIRKTKPSSQSIQNQQQKSPSSSM 214
>UniRef50_A5DTI2 Cluster: Predicted protein; n=1; Lodderomyces
elongisporus NRRL YB-4239|Rep: Predicted protein -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 319
Score = 35.5 bits (78), Expect = 1.3
Identities = 25/79 (31%), Positives = 33/79 (41%)
Frame = +1
Query: 136 NTQCPNNIIFCINTENLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMR 315
N NN NT N NTT + S + S CS ++ TT T T + DS +
Sbjct: 13 NISISNNSNNSNNTTNTNTTSTTKSFSSSSSSSCSSRSTT--TTTTTCTNDNNITSDSNK 70
Query: 316 SRHTLKTPPLHHSLKTSIH 372
+ H T H + SIH
Sbjct: 71 NDHASDTIYFHSTQMQSIH 89
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 35.5 bits (78), Expect = 1.3
Identities = 29/94 (30%), Positives = 41/94 (43%)
Frame = -1
Query: 453 ESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNI 274
++ L P+++ F + ID+ + T RG +GV RW K +P K R+ I
Sbjct: 198 QARLEKQVPVHSV-FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRK--THKGLRKVACI 254
Query: 273 GSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRI 172
G+ ARV G G RT KI RI
Sbjct: 255 GA-WHPARVGCSIARAGQKGYHHRTELNKKIFRI 287
>UniRef50_Q4DGU3 Cluster: Helicase-like protein, putative; n=1;
Trypanosoma cruzi|Rep: Helicase-like protein, putative -
Trypanosoma cruzi
Length = 929
Score = 34.7 bits (76), Expect = 2.3
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 335 PHLFITP*KPLSIVFDRMSIQSPTLK*VAYNGVPFGKADSGDTTNLQRCLFGSIPTLSN 511
PHL ++P L+ ++ +PTL+ V Y+G G+A T + C+F + P + N
Sbjct: 264 PHLIVSPLSTLTGWTRELARWAPTLRVVKYHGERKGRASIRTTRGNRHCVFVTTPAVFN 322
>UniRef50_A5WWD4 Cluster: Novel collagen protein; n=5; Danio
rerio|Rep: Novel collagen protein - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 1194
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -1
Query: 384 RSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGN 211
+ +T GFQG+ G G+P + GVT PG++G G K + P +PG G+
Sbjct: 478 QGETGPTGFQGLP---GPSGLPGAEGVTGKQGPPGSLGPQGSKGKQGP-IGLPGSPGS 531
>UniRef50_A4A686 Cluster: Putative uncharacterized protein; n=1;
Congregibacter litoralis KT71|Rep: Putative
uncharacterized protein - Congregibacter litoralis KT71
Length = 226
Score = 34.3 bits (75), Expect = 3.0
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +1
Query: 157 IIFCINTENLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMRSRHTLKT 336
I CI +L T + VTH++RH + ++ T N R ++ G ++ S +
Sbjct: 45 ITLCIYAHDLKTLNRNVCVTHLARHLLAFEDATRGLTLANRARRTVRQGVTVGSILHAEV 104
Query: 337 PPLHHSLKTSIHSFRSNVN 393
P L+ +L+T SN++
Sbjct: 105 PTLNDALETFTLGLASNIH 123
>UniRef50_A2FG46 Cluster: Putative uncharacterized protein; n=2;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1008
Score = 34.3 bits (75), Expect = 3.0
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = -1
Query: 660 NHVIKYIPPEEYKPMIKSNVKWVEKQKY 577
NH+ +IPPEEY+ ++ +NV++ +K+ +
Sbjct: 241 NHISPFIPPEEYECLMPNNVEYFKKKSF 268
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 33.9 bits (74), Expect = 4.0
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 238
F+ + D+ + T GF GV+KRWG +P KTHR + G +RV
Sbjct: 265 FQQSEACDVCAVTKGHGFTGVVKRWGVACLP-----RKTHRGLRKVACIGAWHPSRVMYT 319
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT KI ++
Sbjct: 320 VARAGQHGYHHRTHLNKKIYQL 341
>UniRef50_A1XVT1 Cluster: Fibrillar collagen precursor; n=1; Hydra
vulgaris|Rep: Fibrillar collagen precursor - Hydra
attenuata (Hydra) (Hydra vulgaris)
Length = 1476
Score = 33.9 bits (74), Expect = 4.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 369 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 256
+RG G+ G KG P G T + RPG+ G+ G+K
Sbjct: 580 ERGLPGIPGLQGMKGSPGLSGATGENGRPGDKGTQGDK 617
>UniRef50_UPI0000E46F0A Cluster: PREDICTED: similar to G/T
mismatch-specific thymine DNA glycosylase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
G/T mismatch-specific thymine DNA glycosylase -
Strongylocentrotus purpuratus
Length = 588
Score = 33.5 bits (73), Expect = 5.3
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -1
Query: 456 PESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPG 280
P ALP P H ++S+ +D + G M GF G P HG + R PG
Sbjct: 288 PHPALPPPPPQQVPHHP-----GVKSEPVDGAYHGGMGGCGFPGQPPMHGGVEIKREPG 341
>UniRef50_A7TEL2 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 1686
Score = 33.5 bits (73), Expect = 5.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 711 WCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQ 583
W G + T+ + + N +I YIP + P+I+S +K + Q
Sbjct: 506 WESQGNEKDTSYIYNISNLIISYIPERAFLPLIESKIKVKDSQ 548
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 33.5 bits (73), Expect = 5.3
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 238
F + ID+ T +G++GV RW K +P KTHR + G ARV
Sbjct: 211 FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP-----RKTHRGLRKVACIGAWHPARVAFS 265
Query: 237 TKMPGHMGNRWRTLRGVKILRIDTKY 160
G G RT KI +I Y
Sbjct: 266 VARAGQKGYHHRTEINKKIYKIGQGY 291
>UniRef50_Q1DYA1 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 2124
Score = 33.1 bits (72), Expect = 7.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 390 DIRSKTMDRGFQGVMKRWG-FKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
D+ K +DR +GV K+WG F + G+ + R+ G + E G + PG +G
Sbjct: 2036 DVTDKDIDRFAEGVFKQWGLFSSEEENPGLGRLSRKNGKMADNSESGL---GLEEPGSVG 2092
>UniRef50_Q4RQM9 Cluster: Chromosome 2 SCAF15004, whole genome
shotgun sequence; n=4; Clupeocephala|Rep: Chromosome 2
SCAF15004, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 760
Score = 32.7 bits (71), Expect = 9.3
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 148 PNNIIFCINTENLNTTQCSPSVTH-VSRHFCSRPNSC--FFTTRTNITRSSMSFGDS-MR 315
P+ + +N+ + T+ ++T VS P+ C F R + RS SF S R
Sbjct: 649 PHKQLLVVNSPTVKPTERKQTLTGTVSDRGLRSPSPCLWFCLNRVHKGRSGKSFSRSNSR 708
Query: 316 SRHTLKTPPLHHS 354
+R T + PP HH+
Sbjct: 709 NRSTSRPPPCHHN 721
>UniRef50_Q2LSF4 Cluster: Seceted metal-dependent hydrolase of the
beta-lactamase superfamily III; n=1; Syntrophus
aciditrophicus SB|Rep: Seceted metal-dependent hydrolase
of the beta-lactamase superfamily III - Syntrophus
aciditrophicus (strain SB)
Length = 319
Score = 32.7 bits (71), Expect = 9.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 551 FSAPTNIQPYFCFSTHFTLDFIIGLYS 631
F TN +P + F THF LD IIGL++
Sbjct: 115 FINDTNTRPLYLFLTHFHLDHIIGLHT 141
>UniRef50_Q4DY12 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma cruzi|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 1942
Score = 32.7 bits (71), Expect = 9.3
Identities = 21/81 (25%), Positives = 40/81 (49%)
Frame = -1
Query: 261 EKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLP 82
+ A +WPGT+ P + + + ++L + + +W+ G E+ + C F ++
Sbjct: 1323 QSACIWPGTQEPRYAPQQ----QPYQLLSMAASGHPLWSEGA---DESSSTCNEF--IVH 1373
Query: 81 LKRNKTAPPFPTQPFMNDVPK 19
K+ K+A PT + DVPK
Sbjct: 1374 EKKRKSASSLPTFSYYTDVPK 1394
>UniRef50_Q28XA1 Cluster: GA12387-PA; n=1; Drosophila
pseudoobscura|Rep: GA12387-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 415
Score = 32.7 bits (71), Expect = 9.3
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 145 CPNNIIFCINTENLNTTQCSPSVTHVSRHF-CSRPNSCFFTTRTNI 279
C +N + + T +++TT CSP+ T + + F CS N+C T T++
Sbjct: 93 CASNYVNPVAT-SMSTTMCSPAATALQKLFNCSVGNACQNVTHTHV 137
>UniRef50_A7T2G6 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 388
Score = 32.7 bits (71), Expect = 9.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 325 YACFSWSHQNS*KTW*YWFW--W*KSTSLA-WNKNAWTHG 215
+AC+ W+ W W W W + T A W +N+WT G
Sbjct: 45 WACWRWNSWTRGTWWACWRWNSWTRGTWWACWRRNSWTRG 84
Score = 32.7 bits (71), Expect = 9.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 325 YACFSWSHQNS*KTW*YWFW--W*KSTSLA-WNKNAWTHG 215
+AC+ W+ W W W W + T A W +N+WT G
Sbjct: 157 WACWRWNSWTRGTWWACWKWNSWTRGTWWACWRRNSWTRG 196
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,482,287
Number of Sequences: 1657284
Number of extensions: 16616077
Number of successful extensions: 45747
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 42625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45576
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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