Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c11r
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.019
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)                36   0.025
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.23 
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_16976| Best HMM Match : Collagen (HMM E-Value=4.1e-11)              32   0.40 
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    29   3.8  
SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)                      29   3.8  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     28   6.6  
SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)                      28   6.6  
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)                28   6.6  
SB_15668| Best HMM Match : Chorion_3 (HMM E-Value=2.5)                 28   6.6  
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    28   8.7  
SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   8.7  
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)              28   8.7  

>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = -1

Query: 714 LWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAEN-IDPS 538
           LW KDG+++  TL+Q+ D  V+        +  +       + Q    + VGA N ++ +
Sbjct: 383 LWLKDGRRLPVTLIQIKDCEVV--------QARVAKGHGGRDPQTE--LQVGAVNKLELN 432

Query: 537 VVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNG 433
            + K   G F    + PKR +C F V+P++ L  G
Sbjct: 433 QIGKAQFGHFKRFSVRPKRKVCSFPVTPDALLTPG 467


>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 31/91 (34%), Positives = 38/91 (41%)
 Frame = -1

Query: 444 LPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSG 265
           L N  P+    F   + ID+   T   GF+GV  RWG K +P      K  R+   IG+ 
Sbjct: 201 LENPAPVRKV-FSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRK--THKGLRKVACIGA- 256

Query: 264 GEKARVWPGTKMPGHMGNRWRTLRGVKILRI 172
              ARV       G  G   RT    KI RI
Sbjct: 257 WHPARVSFSVARAGQAGYHHRTELNKKIYRI 287


>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +1

Query: 172  NTENLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMRSRHTLKTPPLHH 351
            N  NL T   S  +T  + H  +R NS   T   N+     S G +  + H L     H 
Sbjct: 1570 NNNNLLTRDNSHGITSDNSHGITRNNSHGITRDNNVLTRDNSHGITRDNSHVLTRGNSHE 1629

Query: 352  SLKTSIHSFRSNVNTI 399
              + + H  R+N + I
Sbjct: 1630 ITRDNSHGIRNNSHGI 1645


>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 366 RGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKAR 250
           RG QG     G +G+P SHG+      PG IG  GEK +
Sbjct: 184 RGIQGRKGNRGVQGIPGSHGI------PGRIGIKGEKGK 216


>SB_16976| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
          Length = 111

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 366 RGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKAR 250
           RG QG     G +G+P SHG+      PG IG  GEK +
Sbjct: 62  RGIQGRKGNRGVQGIPGSHGI------PGRIGIKGEKGK 94


>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/79 (27%), Positives = 43/79 (54%)
 Frame = +1

Query: 172 NTENLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMRSRHTLKTPPLHH 351
           +T   NTT+ + S+   +RH  +R NS   TT+ N TR + S  ++ R  ++L     H+
Sbjct: 61  STTRHNTTRHN-SLNSTTRHNTTRHNSLHNTTKHNTTRHN-SLHNTTR-HNSLPNTTRHN 117

Query: 352 SLKTSIHSFRSNVNTIPNS 408
           + + +  +  +  N++PN+
Sbjct: 118 TTRHNSLNSTTMHNSLPNT 136



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 187 NTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMR--SRH-TLKTPPLHHSL 357
           NTT+ + S+   +RH  +R NS   TTR N TR +     +    +RH +L     H+SL
Sbjct: 52  NTTRHN-SLNSTTRHNTTRHNSLNSTTRHNTTRHNSLHNTTKHNTTRHNSLHNTTRHNSL 110

Query: 358 KTSIHSFRSNVNTIPNSKM 414
             +     +  N++ ++ M
Sbjct: 111 PNTTRHNTTRHNSLNSTTM 129



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
 Frame = +1

Query: 187 NTTQCSPSVTHVSRHFCSRPNSCFFTTRTN----ITRSSMSFGDSMRS--RH-TLKTPPL 345
           NTT+ + S+ + +RH  +R NS   TTR N     TR + +  +S+ S  RH T +   L
Sbjct: 29  NTTRHN-SLHNTTRHNTTRHNSLHNTTRHNSLNSTTRHNTTRHNSLNSTTRHNTTRHNSL 87

Query: 346 HHSLK--TSIHSFRSNV---NTIPNS 408
           H++ K  T+ H+   N    N++PN+
Sbjct: 88  HNTTKHNTTRHNSLHNTTRHNSLPNT 113


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 363 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWP 241
           G QG  ++ G  G     G +     PG  GS GE+ RV P
Sbjct: 513 GAQGTKRKPGTPGRQGMPGASGRRGAPGAKGSRGERGRVGP 553


>SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)
          Length = 269

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +1

Query: 181 NLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMRSRHTLKTPPLHHSLK 360
           N N+ Q   ++ H+ +H   + N      RTNI        +    +HT   P +   L 
Sbjct: 78  NENSLQVRTNIAHIQKH---KYNENSLQVRTNIAHIQYHKYNENSLQHTHTVPQVQRELA 134

Query: 361 TSIHSFRSNV 390
           TS + + +++
Sbjct: 135 TSTYPYSTHI 144


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -1

Query: 369  DRGFQGVMKRWGFKGMPASHGVTKTH---RRPGNIGSGGEK-ARVWPG-TKMPGHMGNR 208
            +RG QG     G  G P S G T       +PG  GS GEK  +  PG   +PG  G R
Sbjct: 3702 ERGAQGPRGEKGNTGAPGSQGSTGPRGPIGQPGMAGSQGEKGGKGDPGFPGLPGQAGLR 3760


>SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 357 QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK-MPGHMGNR 208
           QG   + G  G+P  HG   T  + GN G  G+     PG K  PG  G+R
Sbjct: 31  QGHDGKNGIPGIPGVHGKPGTPGKSGNDGRNGKPGA--PGPKGPPGPKGSR 79


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 375 TMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK-MPGHMGNR 208
           T DRG  G++   G KGM    G       PG  G  G++    PG+  +PG  G+R
Sbjct: 196 TGDRGKPGLVGDPGKKGMAGRAGAMGMRGLPGPPGRRGKRGD--PGSDGIPGERGDR 250


>SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)
          Length = 654

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -1

Query: 603 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 436
           +  + KQ+   +L+G +    +V+TK YC  +D     P+ H+ + +    +  PN
Sbjct: 164 INCIAKQEKAVLLIGEQGTAKTVMTKGYCERYD-----PELHVFKAMNFSSATTPN 214


>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
          Length = 713

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 327 GMPASHGVTK--THRRPGNIGSGGEKARVWPGTKMPGHMGNRW 205
           G+ ++HG  +  TH + GN+G G  +   +  T+ P    N W
Sbjct: 209 GLGSTHGTPRKETHDQSGNVGGGITQEPCFTKTEPPAPPSNYW 251


>SB_15668| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
          Length = 276

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 327 GMPASHGVTK--THRRPGNIGSGGEKARVWPGTKMPGHMGNRW 205
           G+ ++HG  +  TH + GN+G G  +   +  T+ P    N W
Sbjct: 143 GLGSTHGTPRKETHDQSGNVGGGITQEPCFTKTEPPAPPSNYW 185


>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 133 CNT-QCPNNIIFCINTENLNTTQCSP-SVT 216
           CNT QC  N   C NT   NTTQC+  SVT
Sbjct: 282 CNTTQC--NTTQCCNTTQCNTTQCNKHSVT 309


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 181 NLNTTQCSPS-VTHVSRHFCSRPNS 252
           +L+ +QC+ S VT VSR  C+RPN+
Sbjct: 308 SLDLSQCASSHVTTVSRVLCARPNT 332


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/61 (32%), Positives = 23/61 (37%)
 Frame = -1

Query: 441 PNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 262
           P G P      RVG    +  K  DRG  G     G  G P   G       PG++G  G
Sbjct: 105 PPGPPGKPVIRRVG-IPGLPGKRGDRGTPGAKGPPGLAGEPGEPGTQGPRGDPGDVGEPG 163

Query: 261 E 259
           E
Sbjct: 164 E 164


>SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 299

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 145 CPNNIIFCINTENLNTTQCSPSVTHVSRHFCSRPNSC 255
           CP N  +C+N +   T +C P  T V+ + C   N C
Sbjct: 166 CPANR-YCVNNDGSYTCKCKPGYTLVN-NTCEDINEC 200


>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
          Length = 182

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -1

Query: 369 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWP-GTK-MPGHMGNRWRTL 196
           +RG +G     G  G P + G       PG  G  GEK    P G K  PG + +  R +
Sbjct: 39  NRGRRGRRGPRGPPGKPGADGKPGIRGPPGPKGDKGEKGDAGPRGLKGDPGKIRDAPRVI 98

Query: 195 RGVKILRIDTKYNVIWTLGVA 133
              + L ID+   V+    V+
Sbjct: 99  IAPQKLNIDSSATVVLNCSVS 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,763,937
Number of Sequences: 59808
Number of extensions: 549280
Number of successful extensions: 2166
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)