Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c11r
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical pr... 162 3e-40
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 31 0.62
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 31 0.62
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 31 0.62
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 31 0.62
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 31 0.62
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 31 0.82
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 31 1.1
Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical p... 30 1.9
Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical p... 30 1.9
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 29 2.5
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 29 3.3
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68113-2|CAA92149.2| 327|Caenorhabditis elegans Hypothetical pr... 29 4.4
U33919-1|AAA96505.1| 327|Caenorhabditis elegans MEC-5 precursor... 29 4.4
U33918-1|AAA96504.1| 327|Caenorhabditis elegans MEC-5 protein. 29 4.4
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 28 5.8
AC024791-35|AAF60675.2| 462|Caenorhabditis elegans Innexin prot... 28 5.8
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z49207-4|CAA89073.1| 195|Caenorhabditis elegans Hypothetical pr... 28 7.7
U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protei... 28 7.7
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 28 7.7
>U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical
protein C26E6.6 protein.
Length = 403
Score = 162 bits (393), Expect = 3e-40
Identities = 94/237 (39%), Positives = 132/237 (55%), Gaps = 3/237 (1%)
Frame = -1
Query: 717 PLWCKDGKKVSTTLLQVVDNHVIKYIPPEE-YKPMIKSNVKWVEKQ-KYGCILVGAENID 544
P W +G ++ T+L+V +NHV+ PE YK K + + VGA N D
Sbjct: 114 PQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGNDD 173
Query: 543 PSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN-GTPLYATHFRVGDCIDIRSKTMD 367
P+ T Y F G+ K L F+V+ E ALP+ G PL A HF VG + KT+D
Sbjct: 174 PTKYTLGYRRQFVRAGIPVKEKLGCFLVT-EDALPSAGQPLDARHFGVGQYVTATGKTID 232
Query: 366 RGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGV 187
GFQG M RWG +G P + TK+HRR G++GS G+ AR+WPG +MPGHMG WRT+ G+
Sbjct: 233 WGFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGSVGD-ARIWPGKRMPGHMGYEWRTVSGL 290
Query: 186 KILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPTQPFMNDVPKE 16
+I+RI+ VI+ G ++PG+ G L D + KR K+ P P + + +E
Sbjct: 291 EIVRINVDKQVIYVKG-SVPGDIGETILLKDCLQEEKRLKSGPMPTWAPSLETIEEE 346
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 238
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 238
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 238
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 111 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 167
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT+ KI RI
Sbjct: 168 VARAGQKGFHHRTIINNKIYRI 189
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 238
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 238
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 111 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 167
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT+ KI RI
Sbjct: 168 VARAGQKGFHHRTIINNKIYRI 189
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 417 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 238
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -1
Query: 363 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV 247
G QG + G +GMP G T RPG G GE RV
Sbjct: 221 GLQGQDGKKGEQGMPGPQGPTGRPGRPGPKGPKGEDGRV 259
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 514 NI*QCWNAAKKAPLQICCITRICFTKWHS 428
N C NA K AP + CC T +T+W S
Sbjct: 99 NFFHCTNATKSAPAKRCCPTGGVWTEWSS 127
>Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical
protein F32D8.7b protein.
Length = 380
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 181 NLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRS 288
N+ T++C P R C+RP + F + NI R+
Sbjct: 68 NIATSKCDPHTCDFPRQICARPAAKFQDSSANICRT 103
>Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical
protein F32D8.7a protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 181 NLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRS 288
N+ T++C P R C+RP + F + NI R+
Sbjct: 68 NIATSKCDPHTCDFPRQICARPAAKFQDSSANICRT 103
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = -1
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
ID T GF+GV RW K +P K R+ IG+ +RV G G
Sbjct: 169 IDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFTVARAGQKG 225
Query: 213 NRWRTLRGVKILRI 172
RT+ KI RI
Sbjct: 226 FHHRTIINNKIYRI 239
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = -1
Query: 393 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 214
ID T GF+GV RW K +P K R+ IG+ +RV G G
Sbjct: 169 IDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFTVARAGQKG 225
Query: 213 NRWRTLRGVKILRI 172
RT+ KI RI
Sbjct: 226 FHHRTIINNKIYRI 239
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 607
+W + +K +QVVDN++ +K++P KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 607
+W + +K +QVVDN++ +K++P KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693
>U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical
protein T24C12.3 protein.
Length = 651
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = -1
Query: 615 IKSNVKWVEKQKYGCILVGAENIDPSVVTK--DYCGIFDSVGMLPKRHLCRFVVSPESAL 442
I V+++E CI+ G EN+ PS T+ D F + + HL + S L
Sbjct: 175 IPKTVEYLETHSVNCIVYGQENVFPSFFTRTSDRKAQFCTESLEEVVHLLK--TSKSLGL 232
Query: 441 PNGT----PLYATHFRVGDCIDIRSKTMDRGFQGVMKR 340
P GT P+ + GD I K +D+ Q +++
Sbjct: 233 PYGTILACPIPEKYAADGDAI---QKAIDQAVQEAIEQ 267
>Z68113-2|CAA92149.2| 327|Caenorhabditis elegans Hypothetical
protein E03G2.3 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 369 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGN 211
D G G + G G P S G PG G G A WPG+K +PG G+
Sbjct: 134 DTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPG--APGWPGSKGEDGLPGRPGS 188
>U33919-1|AAA96505.1| 327|Caenorhabditis elegans MEC-5 precursor
protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 369 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGN 211
D G G + G G P S G PG G G A WPG+K +PG G+
Sbjct: 134 DTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPG--APGWPGSKGEDGLPGRPGS 188
>U33918-1|AAA96504.1| 327|Caenorhabditis elegans MEC-5 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 369 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGN 211
D G G + G G P S G PG G G A WPG+K +PG G+
Sbjct: 134 DTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPG--APGWPGSKGEDGLPGRPGS 188
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 336 GFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 208
G G P S G +PGN+G GE P + PG+ G +
Sbjct: 211 GSPGQPGSRGPEGPRGQPGNMGRPGEYGDAGPAGQ-PGNDGEQ 252
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = -1
Query: 363 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRG 190
G G G G P G +PG +G G + +V P PG G R L G
Sbjct: 201 GHPGARGMKGSDGQPGQPGKDGDPGKPGEMGPNGFQGKVGP-DGFPGEKGGDGRRLIG 257
>AC024791-35|AAF60675.2| 462|Caenorhabditis elegans Innexin protein
22 protein.
Length = 462
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 241 RPNSCFFTTRTNITRSSMSFGDSMRSRHTLKTPPLHHSLKTSIHSFRSNVNTI 399
+P +C T + S+ F D + L+ PPLH+++K S N+N I
Sbjct: 50 QPITCLMLPETPDS-SANYFHDFCFYQDKLRIPPLHNAVKRSTRQGTMNINNI 101
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 336 GFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 208
G G P G + PG G G+ + PG + PG GNR
Sbjct: 220 GTAGRPGQPGKQGSAGNPGRKGERGQDGQPGPGGR-PGQPGNR 261
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -1
Query: 363 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 208
G G + G G+P G+ PG+ GSGG T PG G R
Sbjct: 165 GHPGDVGVTGMDGIPGGRGLPGYPGMPGDNGSGGANGHD-GATGQPGRSGTR 215
>Z49207-4|CAA89073.1| 195|Caenorhabditis elegans Hypothetical
protein R07E3.7 protein.
Length = 195
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 96 DTVLPLKRNKTAPPFPTQPFMNDVPKEYLKT 4
+ ++P+K+ T P P+ F+N++ + + KT
Sbjct: 122 ENMVPMKKQVTTPDRPSIDFLNEIHESHAKT 152
>U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protein
164 protein.
Length = 396
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 369 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 256
++G +G G G P G H PG +G GEK
Sbjct: 169 EKGDKGAPGNAGRDGAPGDDGPEGDHGHPGPMGPAGEK 206
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 438 NGTPLYATHFRVGDCIDIRSKTMDR-GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 262
+G L A H G CI+ + G QG + GF G+ + G + +PG G G
Sbjct: 122 SGISLAAVHHIPGGCINCPAGPAGPPGQQGPVGPQGFPGVVGTCGPSGDDGQPGPAGPLG 181
Query: 261 EKARVWP 241
+K P
Sbjct: 182 DKGAQGP 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,835,961
Number of Sequences: 27780
Number of extensions: 416360
Number of successful extensions: 1504
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -