Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c11r
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 425 YMRLILELGIVLTFDRKLWIEVFKE 351
           ++   LEL +V TFD + W  + K+
Sbjct: 4   FVNYALELLVVKTFDSETWEAIKKD 28


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 681 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 595
           T + V +N    Y+PP  +K   K ++ W
Sbjct: 126 TNVVVKNNGTCLYVPPGIFKSTCKIDITW 154


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 425 YMRLILELGIVLTFDRKLWIEVFKE 351
           ++   LEL +V TFD + W  + K+
Sbjct: 4   FVNYALELLVVKTFDSETWEAIKKD 28


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 681 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 595
           T + V  N    Y+PP  +K   K ++ W
Sbjct: 89  TSVVVTHNGSCLYVPPGIFKSTCKIDITW 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 681 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 595
           T + V  N    Y+PP  +K   K ++ W
Sbjct: 157 TNVVVTHNGSCLYVPPGIFKSTCKIDITW 185


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 681 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 595
           T + V  N    Y+PP  +K   K ++ W
Sbjct: 157 TNVVVTHNGSCLYVPPGIFKSTCKIDITW 185


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 645 YIPPEEYKPMIKSNVKW 595
           Y+PP  +K   K +V W
Sbjct: 101 YVPPGIFKSTCKMDVAW 117


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 201 TLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
           T RG+      T + + W +   +    G + Y FDTV
Sbjct: 199 TARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTV 236


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 201 TLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 88
           T RG+      T + + W +   +    G + Y FDTV
Sbjct: 199 TARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTV 236


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 651 IKYIPPEEYKPMIKSNVKWVEKQKYGCIL 565
           + + PP  YK   + NV++    +  CI+
Sbjct: 146 VSWKPPAIYKSSCEINVEYFPFDEQSCIM 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,275
Number of Sequences: 438
Number of extensions: 4980
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)