Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c11r
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17465.1 68416.m02230 ribosomal protein L3 family protein 130 9e-31
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 107 7e-24
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 36 0.020
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 36 0.027
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 36 0.027
At5g64410.1 68418.m08091 oligopeptide transporter OPT family pro... 31 1.0
At5g35570.1 68418.m04232 expressed protein similar to axi 1 [Nic... 30 1.3
At3g63280.1 68416.m07111 protein kinase family protein contains ... 29 3.1
At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At4g20850.1 68417.m03025 subtilase family protein contains simil... 28 5.4
At3g21210.1 68416.m02680 universal stress protein (USP) family p... 28 7.1
At3g09250.1 68416.m01099 expressed protein 28 7.1
At2g31070.1 68415.m03791 TCP family transcription factor, putati... 28 7.1
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ... 28 7.1
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 28 7.1
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 28 7.1
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 28 7.1
At1g37050.1 68414.m04624 hypothetical protein 28 7.1
At2g02955.1 68415.m00243 expressed protein ; expression supporte... 27 9.4
>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
Length = 324
Score = 130 bits (314), Expect = 9e-31
Identities = 81/223 (36%), Positives = 114/223 (51%)
Frame = -1
Query: 714 LWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSV 535
LW K GK++ ++L V DN I S VK VEK+ + +G P
Sbjct: 89 LWDKWGKRIPISILWVDDN--------------IVSQVKTVEKEGIFALQIGCGQKKPKH 134
Query: 534 VTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQ 355
++K G F + G+ KR L F V+ ++ LP GT L HF G +D+ T +GFQ
Sbjct: 135 LSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQ 194
Query: 354 GVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILR 175
G MKR GF GMPASHG + +HR G+ G +V+ G KM G MG RT++ V + +
Sbjct: 195 GCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYK 254
Query: 174 IDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPT 46
ID N++W G +PG G ++ D K + + PFPT
Sbjct: 255 IDPARNLMWVRG-QVPGAEGNFVFIKDAWCK-KPDISKLPFPT 295
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 107 bits (257), Expect = 7e-24
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Frame = -1
Query: 615 IKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRF-VVSPESALP 439
I + +K + Y + +G + +TK G G +P RHL F + + E P
Sbjct: 88 IVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEP 147
Query: 438 NGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGE 259
N ++ F+ GD +D+ T+ +GFQG +KR FK +HG +K+HR G+IG+G
Sbjct: 148 NQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGSIGAGTT 206
Query: 258 KARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 115
RV+ G KMPG MG +R +KI+++D + NV+ G A+PG+ G
Sbjct: 207 PGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKG-ALPGKPG 253
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 36.3 bits (80), Expect = 0.020
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 238
F+ + IDI T +G++GV+ RWG +P KTHR + G ARV
Sbjct: 212 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVSYT 266
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT K+ R+
Sbjct: 267 VARAGQNGYHHRTEMNKKVYRV 288
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 35.9 bits (79), Expect = 0.027
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 238
F+ + IDI T +G++GV+ RWG +P KTHR + G ARV
Sbjct: 212 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVSYT 266
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT KI R+
Sbjct: 267 VARAGQNGYHHRTELNKKIYRL 288
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 35.9 bits (79), Expect = 0.027
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 411 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 238
F+ + IDI T +G++GV+ RWG +P KTHR + G ARV
Sbjct: 212 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVSYT 266
Query: 237 TKMPGHMGNRWRTLRGVKILRI 172
G G RT KI R+
Sbjct: 267 VARAGQNGYHHRTELNKKIYRL 288
>At5g64410.1 68418.m08091 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 729
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 245 GLEQKCLDTWVTDGEHC 195
G+E+K LD W T GEHC
Sbjct: 694 GMEEKSLDWWGTRGEHC 710
>At5g35570.1 68418.m04232 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 652
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +1
Query: 181 NLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMRSRHTLKTPPLHHSLK 360
++N+ + S +T ++ F R S ++ N T +S GD + +T T +HH +
Sbjct: 15 HVNSPRFSGPMTRRAQSF-KRGGSAGSSSNNNNTHVGVSGGDGNNNNNTSSTLRVHHEID 73
Query: 361 TSIHSFRSNV 390
++S RS +
Sbjct: 74 LPLNSPRSEI 83
>At3g63280.1 68416.m07111 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 555
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 597 WVEKQKYGCILVG-AENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESAL 442
WVEK Y CI++G + D + K CG+ P+ LC+++V AL
Sbjct: 70 WVEKGCYVCIVIGYCQGGDMTDTIKRACGVH-----FPEEKLCQWLVQLLMAL 117
>At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 353
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 254 HEFGLEQKCLDTWVTDGEHCVVLRFSVLIQNIMLFG 147
H F +E C+DTW+ C + R+ V ++I+L G
Sbjct: 113 HAFHVE--CVDTWLDAHSTCPLCRYRVDPEDILLIG 146
>At4g20850.1 68417.m03025 subtilase family protein contains
similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
(TPP-II) (Tripeptidyl aminopeptidase)
(Swiss-Prot:P29144) [Homo sapiens]
Length = 1380
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 384 RSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 262
RS + RG + ++R GF MP S T T R G G GG
Sbjct: 51 RSCSRSRGIR--LRRSGFSAMPCSSSDTLTASRVGCGGGGG 89
>At3g21210.1 68416.m02680 universal stress protein (USP) family
protein / DC1 domain-containing protein contains Pfam
profiles PF03107: DC1 domain, PF00582: universal stress
protein family
Length = 686
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 205 PSVTHVSRHFCSRPNSCFFTTRTNITRSSMSFGD 306
P H + + R C T R N+T M FGD
Sbjct: 94 PHTIHTVKDYDKRERLCLETQRLNLTALIMGFGD 127
>At3g09250.1 68416.m01099 expressed protein
Length = 244
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 259 FTTRTNITRSSMSFGDSMRSRHTLKTPPLHHSLKTSIHSFRS 384
F +N+ + FG SMR H K+ P+H ++ ++ ++F S
Sbjct: 9 FCKVSNMVEITSPFGGSMRLLHLPKSYPIHCNMVSASNTFGS 50
>At2g31070.1 68415.m03791 TCP family transcription factor, putative
similar to TCP1 protein (GI:20269127) {Lupinus albus}
and cycloidea (GI:12002867) [Lycopersicon esculentum]
Length = 361
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 304 DSMRSRHTLKTPPLHHSLKTSIHSFRSNVNTI 399
++M SR T P L L S+H F+ N NT+
Sbjct: 163 NNMVSRTTTPPPNLSQDLGLSLHPFQGNNNTV 194
>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 726
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Frame = -3
Query: 565 SW-C*KHRP*CCHQRLLWNI*QCWNAAKKAPLQICCITR-----ICFTKWH 431
SW C K + CC + LLW CW + I C+ + I KWH
Sbjct: 243 SWGCRKKKCYCCDEILLWIFYYCW--VCDCGMNIACVEKLPLLSIHHPKWH 291
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -1
Query: 672 QVVDNHVIKYIPPEEYKPMI-KSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVG 496
Q H K P P KSN + Y ++ ++ S +TK +C ++ G
Sbjct: 38 QTTTTHEAKQSSPTRVAPKNHKSNQLDEILRDYEAVIGIETHVQLSTLTKAFCSCSNNYG 97
Query: 495 MLPKRHLCRFVVSPESALP 439
P +C + ALP
Sbjct: 98 SYPNTSICPVCMGLPGALP 116
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -1
Query: 672 QVVDNHVIKYIPPEEYKPMI-KSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVG 496
Q H K P P KSN + Y ++ ++ S +TK +C ++ G
Sbjct: 38 QTTTTHEAKQSSPTRVAPKNHKSNQLDEILRDYEAVIGIETHVQLSTLTKAFCSCSNNYG 97
Query: 495 MLPKRHLCRFVVSPESALP 439
P +C + ALP
Sbjct: 98 SYPNTSICPVCMGLPGALP 116
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -1
Query: 672 QVVDNHVIKYIPPEEYKPMI-KSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVG 496
Q H K P P KSN + Y ++ ++ S +TK +C ++ G
Sbjct: 38 QTTTTHEAKQSSPTRVAPKNHKSNQLDEILRDYEAVIGIETHVQLSTLTKAFCSCSNNYG 97
Query: 495 MLPKRHLCRFVVSPESALP 439
P +C + ALP
Sbjct: 98 SYPNTSICPVCMGLPGALP 116
>At1g37050.1 68414.m04624 hypothetical protein
Length = 620
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 624 KPMIKSNVKWVEKQKYGCIL 565
K M + KWV++QK+GC++
Sbjct: 390 KSMHSKSQKWVKEQKFGCLI 409
>At2g02955.1 68415.m00243 expressed protein ; expression supported
by MPSS
Length = 666
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -2
Query: 530 PKITVEYLTVLECCQKGTSADLLYHQNLLYQMALHYMRLILELGI------VLTFDRKL- 372
P++ V+ L L+ +K L+Y + Y + L + E+ + VL+F+R+L
Sbjct: 573 PRVKVKRLDYLQYVRKKEDGALIYAAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLA 632
Query: 371 WIE 363
WIE
Sbjct: 633 WIE 635
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,228
Number of Sequences: 28952
Number of extensions: 372970
Number of successful extensions: 1033
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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