Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c11f
(593 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292341-1|CAL23153.2| 393|Tribolium castaneum gustatory recept... 25 0.48
AM292349-1|CAL23161.1| 248|Tribolium castaneum gustatory recept... 23 1.5
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 23 2.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.4
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.5
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.5
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.5
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.5
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 21 7.8
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 21 7.8
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 21 7.8
>AM292341-1|CAL23153.2| 393|Tribolium castaneum gustatory receptor
candidate 20 protein.
Length = 393
Score = 25.0 bits (52), Expect = 0.48
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 295 VIKDKLEAQTALEKKALTSPILNDVKKNV 381
+I+ + T L K LTSP+L D+K+ V
Sbjct: 313 LIRLMYQVTTNLVLKLLTSPLLPDIKEQV 341
>AM292349-1|CAL23161.1| 248|Tribolium castaneum gustatory receptor
candidate 28 protein.
Length = 248
Score = 23.4 bits (48), Expect = 1.5
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +2
Query: 383 HGLLKQKEWDLLHER*ETIHYGVKMVKRYPRLCYRLLTIMLSNIY 517
H + KEW + + M KR+ + ++T+ L N Y
Sbjct: 138 HWVTIMKEWSFMEMSMRNYGSSINMKKRFVVMTSVIMTLALGNPY 182
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 22.6 bits (46), Expect = 2.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 345 DLSHFKRCQKKCNMDSSNKKSGTYCTKDRKLSI 443
DLS+ R +K C +D + YC + L++
Sbjct: 117 DLSYACREEKNCIIDKRQRNRCQYCRYQKCLNM 149
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.4
Identities = 10/37 (27%), Positives = 15/37 (40%)
Frame = +1
Query: 475 TLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEXQKYGC 585
T + V N Y+PP +K K ++ W C
Sbjct: 106 TNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Frame = +1
Query: 511 YIPPEEYKPMIKSNVKWVEXQKYGC 585
Y+PP +K K ++ W C
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQHC 142
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Frame = +1
Query: 511 YIPPEEYKPMIKSNVKWVEXQKYGC 585
Y+PP +K K ++ W C
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQHC 142
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.5
Identities = 10/37 (27%), Positives = 15/37 (40%)
Frame = +1
Query: 475 TLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEXQKYGC 585
T + V N Y+PP +K K ++ W C
Sbjct: 106 TNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Frame = +1
Query: 511 YIPPEEYKPMIKSNVKWVEXQKYGC 585
Y+PP +K K ++ W C
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQHC 142
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 21.0 bits (42), Expect = 7.8
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -3
Query: 255 ICPHSLFWD 229
+CP+ LFW+
Sbjct: 2264 VCPNGLFWN 2272
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 319 VPQVYPLSLPP 287
+PQV PL LPP
Sbjct: 177 LPQVPPLPLPP 187
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 319 VPQVYPLSLPP 287
+PQV PL LPP
Sbjct: 177 LPQVPPLPLPP 187
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,161
Number of Sequences: 336
Number of extensions: 3098
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -