Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c11f
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   2.1  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    27   2.7  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.7  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    27   2.7  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   3.6  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   4.8  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   8.3  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 463 KVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEXQK 576
           K +  L+QV  +     I  EE KP++ S V W E +K
Sbjct: 361 KKARHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEK 398


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 253 DDYLTKENKQFLEEVIKDKLEAQTALEKK---ALTSPILN 363
           DD + K  +QF ++ ++D LE +  L  K   +L SP L+
Sbjct: 119 DDTMEKRLEQFSDDTLQDTLETEKNLNSKTSESLKSPTLS 158


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 514 IPPEEYKPMIKSNVKWVEXQKY 579
           I PE +K +I+ N+ W + + Y
Sbjct: 418 IDPESHKALIEKNISWADDEYY 439


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +2

Query: 395 KQKEWDLLHER*ETIHYGVKMVKRYPRLCYRLLTIMLS 508
           K+++W+    + E I++G++ V   P +   L++ + S
Sbjct: 254 KKQDWEAALAKIEEIYFGIRPVSNQPNILANLMSSLFS 291


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 92  KIVKTLCSQIV*NYYGVLYKNRGLIMRRVIFVVHRGSLDFVHRIGMSQKRECGQ 253
           KI ++  S  +  YYG  Y N    +   +     GSLD +++   SQ    G+
Sbjct: 127 KINRSCTSPYIVKYYGACYNNAECQLNIAMEYCGAGSLDAIYKRVRSQGGRTGE 180


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 478 LLQVVDNHVIKYIPPEEYKPMIKSNVKWVEXQKY 579
           LL+V+ N V  Y+PP   K  +  +   V  +KY
Sbjct: 266 LLKVIKNPVTDYLPPNCRKATLSFDAPTVPPRKY 299


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 256 DYLTKENKQFLEEVIKDKLEAQTALEKK 339
           D+L KE  Q  ++V+KD  E  TA  ++
Sbjct: 577 DFLYKEEWQQYKDVLKDSFELITAFSRE 604


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 217 PYWYV-PKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSP 354
           P+W + PK+   +   + KEN   ++  +    EA T L+   L+SP
Sbjct: 628 PFWAIQPKQ---SSSQVPKENHHNIQSKLSINTEAATDLKANELSSP 671


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +1

Query: 106 TMFPNSLKLLWGAL-QKSRFDNAACNIRGASRQPRFRPPYWY--VPKERVWTDDYLTKEN 276
           T+  N +K L   + QK RFDN      G +        +W     K  V  D  +T  +
Sbjct: 131 TVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDVKLDGIVTVID 190

Query: 277 KQFLEEVIKDK 309
            + ++ ++KD+
Sbjct: 191 CKNIDNILKDE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,343
Number of Sequences: 5004
Number of extensions: 49885
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)