Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c11f
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0074 - 615794-615883,616186-616391,616524-616614                 30   1.2  
09_06_0011 + 20217882-20217989,20218085-20218272,20218355-202184...    30   1.6  
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371...    29   3.7  
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159...    28   4.9  
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760...    28   4.9  
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880...    28   4.9  
03_06_0199 + 32310272-32311432                                         28   6.5  
05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916     27   8.5  

>12_01_0074 - 615794-615883,616186-616391,616524-616614
          Length = 128

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 313 EAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCK 453
           E +  +E +AL + I    K+   W   T  +  + ++IG+Y  W K
Sbjct: 63  ERRIEIEARALLATIARYKKQTDQWLAATNAINSVLKEIGDYENWMK 109


>09_06_0011 +
           20217882-20217989,20218085-20218272,20218355-20218421,
           20218464-20218538,20219100-20219152,20219661-20219715,
           20219812-20219886,20220495-20220612,20220720-20220766,
           20220853-20220954
          Length = 295

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 196 RQPRFRPPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKK 375
           R PRF P Y  V KE      +  + N  F +E+  +K + Q ++ KK+     + ++K 
Sbjct: 149 RDPRFEPVYGPVDKE-----GFRKRYNFLFDDELPAEKEKLQKSI-KKSKDPNAIEEMKS 202

Query: 376 NVTWTPQTKR 405
            +TW  +  R
Sbjct: 203 RITWIDKQLR 212


>08_01_0418 -
           3716226-3716279,3716531-3716581,3716656-3716751,
           3717037-3717194,3717303-3717417,3717511-3717564,
           3717843-3717950,3718494-3718583,3718818-3718856,
           3718993-3719172,3719264-3719576,3719659-3719834
          Length = 477

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +1

Query: 262 LTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYP 441
           L +EN + L ++++   + Q ALE+K      L + +K  T + Q K   L     G Y 
Sbjct: 247 LAQENSKLLPKIVESPEKLQRALEEKKTARAELKNAEKIATQSVQEKTATLEIYSKG-YE 305

Query: 442 LWCKDGKKVSTTLLQV 489
              K   K+     QV
Sbjct: 306 KLSKHSTKIQALQEQV 321


>10_08_1042 -
           22515298-22515354,22515614-22515709,22515806-22515988,
           22516277-22516365,22516481-22516722,22517008-22518116
          Length = 591

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +1

Query: 400 KRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEXQKY 579
           + +  + RK  N    C D    S       DN V+++   E +K  IK + K    Q Y
Sbjct: 14  RNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAKIKCHFKMQIIQSY 73


>04_04_0929 -
           29474540-29475247,29475485-29475850,29476032-29476093,
           29476191-29476302,29476401-29476529,29476724-29476738
          Length = 463

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 163 DNAACNIRGASRQPRFRPPYWYVPKERVWTDDYLTKENKQFLE 291
           D++  ++   +R P+ R PY    +   WT+D    E+K FLE
Sbjct: 34  DSSGMDMMDEARIPKARKPYTITKQREKWTED----EHKLFLE 72


>03_05_0825 -
           27986393-27986767,27987541-27987625,27987936-27988036,
           27988144-27988227,27988868-27988939,27989203-27989319,
           27989386-27989526,27989951-27990122,27990324-27990372,
           27990773-27990821,27991240-27991270,27991301-27991371
          Length = 448

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/56 (21%), Positives = 30/56 (53%)
 Frame = +1

Query: 214 PPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNV 381
           PP +Y+P + +  D  + +ENK+   +  K +  A+    +K +    +++V++ +
Sbjct: 301 PPIYYMPAKPIIDDPAIAEENKEKAFQEWKSERRAELTQFQKQVEEQYMSNVERQL 356


>03_06_0199 + 32310272-32311432
          Length = 386

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 184 RGAS-RQPRFRPPYWYVPKERVWTD 255
           RGAS R PRFRP +W +  E   TD
Sbjct: 18  RGASARDPRFRPRHWAMLDEVFQTD 42


>05_05_0122 - 22533212-22533375,22533658-22533763,22533878-22533916
          Length = 102

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 244 VWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILND 366
           VW +  L KENK+F E   KD+ E     E       +L+D
Sbjct: 49  VWKE--LEKENKEFFETYNKDRAERNIEAETMQRIQKMLSD 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,745,003
Number of Sequences: 37544
Number of extensions: 290385
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)