Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c11f
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)                    28   4.9  
SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74)              28   6.5  
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        27   8.6  
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)                     27   8.6  

>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +1

Query: 292 EVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVS 471
           E ++ ++E Q  L+ +    P+       V W   +KR G +  K+G   LW KDG+++ 
Sbjct: 336 EDMQVEIERQKRLQDR---QPVAIPAPGEVEWQKSSKRTGAVGVKLGMSALWLKDGRRLP 392

Query: 472 TTLLQVVDNHVIK 510
            TL+Q+ D  V++
Sbjct: 393 VTLIQIKDCEVVQ 405


>SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 PKERVWTDDYLTKENKQFLEEVIK 303
           PK RV TD  LTKEN  FL++  K
Sbjct: 575 PKIRVETDGSLTKENFSFLQKTNK 598


>SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)
          Length = 389

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 320 CASSLSFITSSKNCLFSLVR*SSVHTLSFGTYQYGGRNLGCR-DAPRILHAALSNLDFCK 144
           CA+  +F+T +  C F        + +   T QY    L  + D    +   L + DF +
Sbjct: 13  CATECNFVTRTPTCRFKTCNDLRAYIVGTCTAQYSQNGLAVKSDGEHGMARKLCSSDFIQ 72

Query: 143 APHNNFKLFG 114
           A   N+  +G
Sbjct: 73  ARKTNYPGWG 82


>SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74)
          Length = 330

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 235 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVT 384
           +E  +T D  +     F  E +KDK+ AQT     + T+P  +  K+N+T
Sbjct: 233 RESFYTTDADSANEGNFALEELKDKMRAQTQGSDSSNTNP--HSSKENIT 280


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +1

Query: 232 PKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVG 411
           P+E  WT  Y  K  K   EEV K +       ++    + + N + K     P+ ++  
Sbjct: 26  PREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKR-NQKPEVRKAQ 84

Query: 412 LIARKIGNYPLWC 450
                  NYP  C
Sbjct: 85  REQAISNNYPTRC 97


>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
          Length = 148

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 250 TDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKR 405
           +++ L +  KQ  + V +D L+ +       L  P  N  ++++TW PQ KR
Sbjct: 63  SNEELWRRTKQ--QPVDQDVLQRRWRWIDHTLRKPATNITRQSLTWNPQGKR 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,569
Number of Sequences: 59808
Number of extensions: 336392
Number of successful extensions: 975
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)