Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c11f
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17465.1 68416.m02230 ribosomal protein L3 family protein 35 0.047
At5g09320.1 68418.m01080 vacuolar sorting protein 9 domain-conta... 29 3.1
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ... 28 5.4
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 27 7.1
At1g31870.1 68414.m03917 expressed protein 27 7.1
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 9.4
At4g34170.1 68417.m04848 kelch repeat-containing F-box family pr... 27 9.4
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 9.4
At1g37050.1 68414.m04624 hypothetical protein 27 9.4
>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
Length = 324
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 394 QTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHV 504
++KR G+IA K G LW K GK++ ++L V DN V
Sbjct: 73 RSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIV 109
>At5g09320.1 68418.m01080 vacuolar sorting protein 9
domain-containing protein / VPS9 domain-containing
protein contains similarity to Rab5 GDP/GTP exchange
factor, Rabex5 [Bos taurus] gi|2558516|emb|CAA04545;
contains Pfam profile PF02204: Vacuolar sorting protein
9 (VPS9) domain
Length = 712
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 211 RPPYWYVPKERVWTDDYLTKENKQFLEEV 297
R YWY P+ R++TD + +EEV
Sbjct: 581 RKEYWYKPQVRMYTDMITVMADNSLMEEV 609
>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
protein
Length = 144
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 217 PYWYVPK----ERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKA-LTSPILNDVKKNV 381
PY PK E++W +DYL +E+ + +++K + + EK+ +T L++ +
Sbjct: 75 PYPLRPKYNLAEKLWYEDYLREESLLIEADDLENKQKKKKIKEKQINVTETNLHNKENQF 134
Query: 382 TW 387
TW
Sbjct: 135 TW 136
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 477 SRGYLFTIFTP*WIVSYLSCNKSHSFCLRSPCYIFFD 367
+ GY+F + +I + C K H F RS Y+ D
Sbjct: 921 TNGYIFPSYEEVYIGAVSKCRKEHLFIFRSGYYLNVD 957
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 148 QKSRFDNAACNIRGASRQPRFRPPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTA 327
+K RF N + G + + FR + +R+ ++YL + K+ +E+ + KLE
Sbjct: 367 EKLRFKNMDSELTGQNAEAVFRDK---ITGKRISKEEYLKSKQKKVIEKPKEIKLEWGKG 423
Query: 328 LEKK 339
L +K
Sbjct: 424 LAQK 427
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 214 PPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTAL 330
PP Y +VW +DYL +E+ E ++ L+ AL
Sbjct: 442 PPPKYCIHHKVWYEDYLRRESLLIEENETEEGLDDTPAL 480
>At4g34170.1 68417.m04848 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 293
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 223 WYVPKERVWT 252
WY PKERVWT
Sbjct: 244 WYDPKERVWT 253
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 187 GASRQPRFRPPYWYVPKERVWTDDYLTKENKQFLE-EVIKDKLEAQTALEKKALTSPIL 360
G ++ + P Y E++W +DYL +++ E E ++ E + +E AL +L
Sbjct: 755 GVAKTAPYPPRIKYNLAEKLWYEDYLLRDSLLIEEDETVEGLDETPSCVEAVALREKVL 813
>At1g37050.1 68414.m04624 hypothetical protein
Length = 620
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 532 KPMIKSNVKWVEXQKYGCIL 591
K M + KWV+ QK+GC++
Sbjct: 390 KSMHSKSQKWVKEQKFGCLI 409
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,311,312
Number of Sequences: 28952
Number of extensions: 249631
Number of successful extensions: 681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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