Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c10r
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VDG3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q8ZSD5 Cluster: Alr7576 protein; n=2; Nostocaceae|Rep: ...    33   8.6  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   8.6  

>UniRef50_A4VDG3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 107

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 27  YSC*ELFIILNKNHIISFVKCTLLCYYKVELTTIRKYAV 143
           + C +LF I+N N+I+ F+  +  CY  ++ TT+ KY +
Sbjct: 56  FQCTKLFKIINNNYILFFIWNSFTCYLIIQQTTL-KYII 93


>UniRef50_Q8ZSD5 Cluster: Alr7576 protein; n=2; Nostocaceae|Rep:
           Alr7576 protein - Anabaena sp. (strain PCC 7120)
          Length = 223

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 232 STLDLILSPSELYRQIVGPFFYCLDGWPRSQPTWC*WLSEPID 360
           S LDL  +  E+ + I GP     +GW +S PTW  W +  +D
Sbjct: 49  SLLDLAGASREIVQYIAGPIVTQQNGWQQSIPTWV-WRAIAVD 90


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 478 WYLPVRTHKRSYYQ 519
           WYLP RTHKRSY++
Sbjct: 572 WYLPARTHKRSYHR 585


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,647,983
Number of Sequences: 1657284
Number of extensions: 12259737
Number of successful extensions: 22313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22313
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)