Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c10r
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    29   0.63 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   4.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   5.8  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -3

Query: 448 RFEWRGSRCNYTEIL*LISQGGWRHLRCRYLWAPITTNTRWAAISATHLSSKKKDLLSGG 269
           +FEW    C+  E++  + +  W+ L+        T +T   A      S   K LL GG
Sbjct: 647 KFEWHFVSCHLAEMIHFVIEISWQELQLAMEKPNATLDTYIEAHEKYVTSITHKGLLGGG 706

Query: 268 IARSD 254
            +R++
Sbjct: 707 KSRNE 711


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 385 GWRH---LRCRYLWAPITTNTRWAAISATHLSSKKKDLLSGGIARSDLVLNQEYFKPQMR 215
           GW+    L+ + L +P  T+T  + +       ++K LLS  +   D V+N +   P + 
Sbjct: 195 GWKSFLDLQVKNLKSPTATDTSSSPLEHIRSLRRRKSLLSRQVKADDAVINYQDGSPIVE 254

Query: 214 EVF 206
           + +
Sbjct: 255 KAY 257


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 235 TLDLILSPSELYRQIVGPFFYCL 303
           T DL+L+P  +Y  ++ P   C+
Sbjct: 848 TCDLVLAPDAIYENLIIPLLTCI 870


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,992
Number of Sequences: 5004
Number of extensions: 51483
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)