Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c10r
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      28   6.1  
SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)                   28   8.1  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   8.1  
SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)                       28   8.1  

>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 349  PITTNTRWAAISATHLSSKKKDLLSGGIARSDLVLNQEYF 230
            P    T  + ++ + L   ++D+LSGGI++ D +L  + F
Sbjct: 1663 PRLVATTTSGLNTSELKDSERDILSGGISQLDKLLADDSF 1702


>SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)
          Length = 817

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 456 QK*AVWWLVP-TRADSQEVLLPVKKSP*RRKADATR 560
           +K +VW  +P TRA  ++  L  KK   +RK +ATR
Sbjct: 409 KKVSVWGRIPMTRAQKKKAKLEKKKEKEQRKKEATR 444


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 346  ITTNTRWAAI--SATHLSSKKKDLLSGGIARSDLVLNQE 236
            + TN  +A I  S T  S  +K +L GG+ R+D +  +E
Sbjct: 1232 VRTNREYATIRESETESSYSRKSVLDGGLTRTDKITPKE 1270


>SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)
          Length = 513

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 461 IGSVVVGTYPCGLTRGPTTSKEKSLKT 541
           +G VV+   PCG+TR P +     +K+
Sbjct: 3   LGFVVIARVPCGVTRQPASQPASPIKS 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,471,314
Number of Sequences: 59808
Number of extensions: 404393
Number of successful extensions: 1054
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)