Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09r
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    33   0.046
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.0  

>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
 Frame = +3

Query: 435 RKPKQCFHGKSRLRGTQLG-KHHPTLPGSESPNFWNETISAS-------VLNLDETXDSG 590
           + P   F   + LR  Q G K  P LP    P+F+NE ++ S          L     S 
Sbjct: 100 KHPSPSFPETTSLRNLQNGSKQKPALPNFNDPHFYNEDVTRSGHPNRSIYTQLPRNEFSN 159

Query: 591 VATLWNAAVTAXKLFW 638
              LWN      ++ W
Sbjct: 160 ARVLWNRLSARDRVLW 175


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 30   NK*FSIFIAKIRTFIIQNDIVPKILNTLSIGDQYELTRA 146
            NK FS ++  + +    N + PK +   SI +QYE   A
Sbjct: 1121 NKMFSAYMLTVASTSTMNGLQPKFIYFRSIYEQYEQNTA 1159


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 99  ILNTLSIGDQYELTRASK 152
           ++N L IG+QY L  ASK
Sbjct: 366 LMNALEIGEQYNLKSASK 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,481
Number of Sequences: 5004
Number of extensions: 40277
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)