Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09r
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0448 + 29462920-29463052,29463220-29463349,29463608-294637...    30   1.4  
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826...    28   5.5  
03_01_0311 + 2453057-2454610                                           28   5.5  
07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738     27   9.6  

>01_06_0448 +
           29462920-29463052,29463220-29463349,29463608-29463732,
           29463923-29464458
          Length = 307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 474 RGTQLGKHHPTLPGSESPNFWNETISASVLN 566
           R  Q+ KH P    +E  NFWN TI   +++
Sbjct: 88  RWAQIAKHLPGRTDNEVKNFWNSTIKKKLIS 118


>03_02_0721 -
           10677286-10678018,10679293-10679373,10682516-10682645,
           10682969-10683101
          Length = 358

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 450 CFHGKSRLRGTQLGKHHPTLPGSESPNFWNETISASV 560
           CF   + +R + +  H P    +E  N+WN  +S  +
Sbjct: 107 CFQQNTHVRWSLIASHLPGRTDNEIKNYWNSHLSRQI 143


>03_01_0311 + 2453057-2454610
          Length = 517

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 620 RHSCVPKCRNSTIXRLIQIKNGS*NCFIP 534
           RH  + +C  S++  LIQ + G   C IP
Sbjct: 330 RHHLIRQCGASSLCNLIQCRKGEKKCLIP 358


>07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738
          Length = 400

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 474 RGTQLGKHHPTLPGSESPNFWNETISASVL 563
           R  Q+ KH P    +E  NFWN  I   ++
Sbjct: 87  RWAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,453
Number of Sequences: 37544
Number of extensions: 255938
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)