Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09r
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid desa...    31   0.53 
AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical ...    31   0.53 
AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical ...    28   6.5  

>L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid
           desaturase protein.
          Length = 402

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 211 KLHNQ-VNHSD*SHNSYR*ESRDWCCIRHWKAWSRRLHQVGW 333
           KLH+   NH D  H     + +DW  +  WK W   +   GW
Sbjct: 160 KLHHAFTNHIDKDHGHVWIQDKDWEAMPSWKRWFNPIPFSGW 201


>AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical
           protein Y67H2A.8 protein.
          Length = 402

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 211 KLHNQ-VNHSD*SHNSYR*ESRDWCCIRHWKAWSRRLHQVGW 333
           KLH+   NH D  H     + +DW  +  WK W   +   GW
Sbjct: 160 KLHHAFTNHIDKDHGHVWIQDKDWEAMPSWKRWFNPIPFSGW 201


>AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical
           protein Y67D2.4 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 114 SIGDQYELTRASKISQQPYHNFRYKNHNLNN 206
           SIG++++  RA+K   Q Y N ++K+  L+N
Sbjct: 276 SIGERWDFDRAAKYFIQLYRNRKFKDSCLDN 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,459,302
Number of Sequences: 27780
Number of extensions: 232030
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)