Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09r
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27810.1 68416.m03469 myb family transcription factor (MYB3) ...    29   2.0  
At5g40350.1 68418.m04895 myb family transcription factor (MYB24)...    29   2.6  
At3g13890.1 68416.m01755 myb family transcription factor (MYB26)...    29   3.5  
At5g12870.1 68418.m01477 myb family transcription factor (MYB46)...    28   6.1  
At3g12720.1 68416.m01589 myb family transcription factor contain...    27   8.0  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    27   8.0  

>At3g27810.1 68416.m03469 myb family transcription factor (MYB3)
           (MYB21) contains Pfam profile: PF00249 myb-like
           DNA-binding domain ;identical to ATMYB3 GI:2280528 from
           [Arabidopsis thaliana]; identical to cDNA putative
           transcription factor (MYB21) mRNA, partial cds
           GI:3941431
          Length = 226

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 456 HGKSRLRGTQLGKHHPTLPGSESPNFWNETISASVLNLDETXDSGVAT 599
           H K   R +++ KH P    +E  NFW   I   +   D T  S V +
Sbjct: 90  HAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSVGS 137


>At5g40350.1 68418.m04895 myb family transcription factor (MYB24)
           similar to Myb26 GI:1841475 from [Pisum sativum]
          Length = 214

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 456 HGKSRLRGTQLGKHHPTLPGSESPNFWNETISASVLNLDETXDSG 590
           H K   R +++ KH P    +E  NFW   I   ++   ET   G
Sbjct: 87  HAKWGNRWSKIAKHLPGRTDNEIKNFWRTKIQKYIIKSGETTTVG 131


>At3g13890.1 68416.m01755 myb family transcription factor (MYB26)
           similar to myb-related transcription factor GI:1167486
           from [Lycopersicon esculentum]; contains myb DNA binding
           domain: PF0049
          Length = 367

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 474 RGTQLGKHHPTLPGSESPNFWNETISASVLN 566
           R  Q+ KH P    +E  NFWN +I   +++
Sbjct: 97  RWAQIAKHLPGRTDNEVKNFWNSSIKKKLMS 127


>At5g12870.1 68418.m01477 myb family transcription factor (MYB46)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 280

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 453 FHGKSRLRGTQLGKHHPTLPGSESPNFWNETISASVLNLDET 578
           FH     R +Q+    P    +E  NFWN TI   +  + +T
Sbjct: 87  FHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDT 128


>At3g12720.1 68416.m01589 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 307

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 QLGKHHPTLPGSESPNFWNETISASVLN 566
           Q+ KH P    +E  NFWN  I   +L+
Sbjct: 101 QIAKHLPGRTDNEVKNFWNSCIKKKLLS 128


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 441 PKQCFHGKSRLRGT--QLGKHHPTLPGSESPNFWNETISASVLNLDETXDSGVATLWNA 611
           PK  F  K    G   + G+  P+   SES NF+    + S    D +  S V++ W++
Sbjct: 122 PKSLFGLKKSKSGDLKKTGQQEPSSTTSESDNFYESGTTLSPSEEDSSQGSPVSSRWSS 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,656,866
Number of Sequences: 28952
Number of extensions: 211929
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)