Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09f
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.37 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 352 RKRDSYSCRRPGNHIRDSQTRNR 420
           RK  SY+CR   N I D + RNR
Sbjct: 115 RKDLSYACREEKNCIIDKRQRNR 137


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 212 DRSIAASTYRLPTTTRPLHY 271
           D + AAS +    T+ PLHY
Sbjct: 143 DPAFAASIFHAAATSLPLHY 162


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 590 GTRSGKYHTCRYVSEQRNQW-SVCKSQEKQH*RR 492
           G  S K    RY  +Q+NQW   C+ +E+   RR
Sbjct: 567 GGNSMKKCRARYGLDQQNQWCKPCRPREQLTWRR 600


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 590 GTRSGKYHTCRYVSEQRNQW-SVCKSQEKQH*RR 492
           G  S K    RY  +Q+NQW   C+ +E+   RR
Sbjct: 459 GGNSMKKCRARYGLDQQNQWCKPCRPREQLTWRR 492


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 26  LVVLSVLKFVKMANYKVIIFLAACVLA 106
           LVV++ LKF+K      I+   AC+ A
Sbjct: 287 LVVVTFLKFIKKIQIFGIMITKACMSA 313


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = +2

Query: 320 VEIQLYATRANVSEIVIHADDLEITSVILRQGTVTTPSTYTLQKELQFLRLRL 478
           V  Q+Y   A  S   +H+ D+ + +V+ +       S Y ++     L+  +
Sbjct: 94  VHAQVYVCLAKNSVGSVHSRDVNVRAVVNQYYEAEVVSEYVIRGNTAVLKCNI 146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,665
Number of Sequences: 336
Number of extensions: 3044
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)