Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09f
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    28   0.90 
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    27   1.6  

>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 400 HGCDFQVVGMNNYLAYVSPSGVQLDFNGARE 308
           HGC ++   +NN ++ ++  G+  D  G RE
Sbjct: 384 HGCPYRTYSVNNLVSALASMGIAPDSAGCRE 414


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 350 NVSEIVIHADDLEITSVILRQGTVTTPSTYTLQKELQFLRLRLNTGTLVF 499
           N   I +H +D   T   L Q  +T P T  L     F+R  L   T+VF
Sbjct: 240 NPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKTIVF 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,002
Number of Sequences: 5004
Number of extensions: 49364
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)